View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_2 (Length: 700)
Name: NF2274_high_2
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Original strand, 49238470 - 49238908
Alignment:
| Q |
20 |
agggacacggcagttattagcaaagaaagtttcggaattaagaaaagcaaagcagcacaaccatgcacttcctagtacttacacgaaagtggttttgtgg |
119 |
Q |
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| T |
49238470 |
agggacacggcagttattagcaaagaaagtttcggaattaagaaaagcaaagcagcacaaccatgcacttcctagtacttacacgaaagtggttttgtgg |
49238569 |
T |
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| Q |
120 |
tattttcccattcgaccgttcccctaatattctcatacgtggcaccctcttattcattcccatcaaacctgttaggaaatccacgtcccacaacaagccg |
219 |
Q |
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| T |
49238570 |
tattttcccattcgaccgttcccctaatattctcaaacgtggcaccctcttattcattcccatcaaacctgttaggaaatccacgtcccacaacaagccg |
49238669 |
T |
|
| Q |
220 |
ttagatccgaatcctaaccataaccaaacacgcaatttaatataacaacaaactaaccatggttaagttatatcattcacacgaaaccctaattatatcc |
319 |
Q |
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| T |
49238670 |
ttagatccgaatcctaaccataaccaaacacgcaatttaatataacaacaaactaaccatggttaagttatctcattcacacgaaaccctaattatatcc |
49238769 |
T |
|
| Q |
320 |
aaaacacccttctttgttttattaatcactcttttaccctctctcatcccttatctatttaaccagcctccgagactcgctaggtttgccaaaccaattc |
419 |
Q |
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| T |
49238770 |
aaaacacccttcttttttttattaatcactcttttaccctctctcttcccttatctatttaaccagcctccgagactcgctaggtttgccaaaccaattc |
49238869 |
T |
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| Q |
420 |
cccaaaggggtccttaacaggactcaaccaaaccctagc |
458 |
Q |
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| T |
49238870 |
cccaaaggggtccttaacaggactcaaccaaaccctagc |
49238908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 496 - 693
Target Start/End: Original strand, 49238946 - 49239143
Alignment:
| Q |
496 |
ctcttccgaattcctctgaaaaacaaacaaaaatgtcttcatcgtcttatcgcgnnnnnnnntcatgtggccctgttcttcgttcactttcaccttctgg |
595 |
Q |
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| T |
49238946 |
ctcttccgaattcctctgaaaaacaaacaaaaatgtcttcatcctcttatcgcgaaaaaaaatcatgtggccctgttcttcgttcactttcaccttctgg |
49239045 |
T |
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| Q |
596 |
aagattctgttcctatacacaatcaagaacccctttctctacaccttcatctgctttcgcttcttccacaaactcaaccttttcatcttcctatgctt |
693 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49239046 |
aagattctgttcctatacacaatcaagaacccctttctctacaccttcatcagctttcgcttcttccacaaactcaaccttttcatcttcctctgctt |
49239143 |
T |
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