View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_20 (Length: 340)
Name: NF2274_high_20
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 49953101 - 49952772
Alignment:
| Q |
14 |
caatgcaccactttttcctttaattaatactttgctttgctccctcctttaatttcatctacatattgcatatagctc-tttatcatacaaataaattgg |
112 |
Q |
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| T |
49953101 |
caatgcaccactttttcctttaattaatactttgctttgctccctcctttaatttcatctacatattacatatagctcctttatcatacaaataaattgg |
49953002 |
T |
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| Q |
113 |
aatagaataagatgttgtgggttcgaacccagacactcgcactcatgtcgcagtggtgctaaccaccgtactacaacacgagggacaattaatcttgttt |
212 |
Q |
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| T |
49953001 |
aatagaataagatgttgtgggttcgaacccagacacttgcactcatgtcgcagcggtgctaaccaccgtactacaacatgagggacaattaatcttgatt |
49952902 |
T |
|
| Q |
213 |
tcaaacatgcgataatatatttgccacttcaa----------------tttctttcctttatttactatacaaattacttttaattttcaagcaaaatca |
296 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49952901 |
tcaaacatgcgataatatatttgccacttcaatttcaaccttatcaaatttctttcctttatttactatacaaattacttttaattttcaagcaaaatca |
49952802 |
T |
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| Q |
297 |
taacaatagtattaggcatcatgatataga |
326 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49952801 |
taacaatagtattaggcatcatgatataga |
49952772 |
T |
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