View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2274_high_21 (Length: 329)
Name: NF2274_high_21
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 46092137 - 46092445
Alignment:
| Q |
1 |
aaagaaggcgcgaaagcgatgaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttctttgaagctgtttacc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092137 |
aaagaaggcgcgaaagccatgaaattggctactcataaggccaaccgcgtcataggtccgattatctctttcggatgggacttctttgaagctgtttacc |
46092236 |
T |
|
| Q |
101 |
atggtggtacctttacagagggatttcttaggggaactggtacattttttggaacttatagtggaggcttcatgggggagcaaatacttggaagatttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092237 |
atggtggtacctttacagagggatttcttaggggaactggtacattttttggaacttatagtggaggcttcatgggggagcaaatacttggaagatttgg |
46092336 |
T |
|
| Q |
201 |
tggttatcttgttggaagtcaattgggaagttgggttggtggtagaatagggctcatgctatatgatgtggttaatggagtgcattatattatatgttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092337 |
tggttatcttgttggaagtcaattgggaagttgggttggtggtagaatagggctcatgctatatgatgtggttaatggagtgcattatattatatgttgc |
46092436 |
T |
|
| Q |
301 |
agtttgttc |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
46092437 |
agtttgttc |
46092445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 46087054 - 46087316
Alignment:
| Q |
21 |
gaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttctttgaagctgtttaccatggtggtacctttacagag |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| || ||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46087054 |
gaaattggctacccgtaaggccaaccgcatcacaggtcccatcatctcttccggctgggacttttttgaagctgtttactatggtggtacctttacagag |
46087153 |
T |
|
| Q |
121 |
ggatttcttaggggaactggtacattttttggaacttatagtggaggcttcatgggggagcaaatacttggaagatttggtggttatcttgttggaagtc |
220 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||| ||||| ||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
46087154 |
ggattccttagaggaactggtacgttgtttgggacttacggtgtcggctttgtgggggagcaaaggcttggaagatt---tggttatcttgttggaagtc |
46087250 |
T |
|
| Q |
221 |
aattgggaagttgggttggtggtagaatagggctcatgctatatgatgtggttaatggagtgcatt |
286 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||| ||||||| |||| |||||||||||||| |
|
|
| T |
46087251 |
aattgggaagttggattggaggtagaataggactcatggtatatgacgtggctaatggagtgcatt |
46087316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 37476928 - 37477009
Alignment:
| Q |
205 |
tatcttgttggaagtcaattgggaagttgggttggtggtagaatagggctcatgctatatgatgtggttaatggagtgcatt |
286 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| |||||||| | ||| | ||||||||| |||| |||||||||| |
|
|
| T |
37476928 |
tatcttgttggaagtcacatgggcagttgggttggtggcagaataggattaatgatttatgatgtgattaacggagtgcatt |
37477009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University