View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2274_high_26 (Length: 284)
Name: NF2274_high_26
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5202838 - 5202736
Alignment:
| Q |
1 |
gataaacagatcaatagatcatattatatgcacatgtataacaaatcataggtggttaaaatatctattattaatttgtttactttattactcatatcta |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5202838 |
gataaacaaatcaatagatcatattatatgcacatgtataacaaattataggtggttaaaatatctattattaatttgtttactttattactcatattta |
5202739 |
T |
|
| Q |
101 |
tta |
103 |
Q |
| |
|
||| |
|
|
| T |
5202738 |
tta |
5202736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 5202648 - 5202570
Alignment:
| Q |
121 |
actaaccaaattttttaagaaataaaattaatgaaaaaataattctctaattttgacgtctgtaacaaagttaaagaca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5202648 |
actaaccaaattttttaagaaataaaattaatgaataaataaatctctgattttgacgtctgtaacaaagttaaagaca |
5202570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35257379 - 35257319
Alignment:
| Q |
1 |
gataaacagatcaatagatcatattatatgcacatgtataacaaatcataggtggttaaaa |
61 |
Q |
| |
|
||||| || |||||||| | |||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
35257379 |
gataaccaaatcaatagttgatattatatgcacatgcataacaaatcgtgagtggttaaaa |
35257319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22787872 - 22787808
Alignment:
| Q |
1 |
gataaacagatcaatagatcatattatatgcacatgtataacaaatcataggtggttaaaatatc |
65 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||| |||||| ||||||| || |||||||||| |
|
|
| T |
22787872 |
gataaacgaatcaatagttgatattatatgcacatacataacagatcatagatgtttaaaatatc |
22787808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 51920933 - 51920969
Alignment:
| Q |
10 |
atcaatagatcatattatatgcacatgtataacaaat |
46 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
|
|
| T |
51920933 |
atcaatagttaatattatatgcacatgtataacaaat |
51920969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University