View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_28 (Length: 269)
Name: NF2274_high_28
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 30419152 - 30419391
Alignment:
| Q |
16 |
aatattaatcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaa-taatagttttatcaacttggggattaagttggcatttacaaa |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30419152 |
aatattgatcattaaataagtgagaaaatcacattcggagaaaacaaattgataaaaataatagttttatcaacttggggattaagttggcatttacaaa |
30419251 |
T |
|
| Q |
115 |
gattaatcatcctagatgattgacatatatttaatagattgatccatccctacacttgtgtttgtataagcataaaactcaataaataatttaactaaat |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30419252 |
gattaatcatccaagatgattgacatatatttaatagattgatccatccctacatttgtgtttgtataagcataaaactcaataaataatttaactaaat |
30419351 |
T |
|
| Q |
215 |
ggttaaagaaccaaatatttgtaccacaccatgttatagt |
254 |
Q |
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| T |
30419352 |
ggttaaagaaccaaatatttgtaccacaccatgttatagt |
30419391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 30431018 - 30431258
Alignment:
| Q |
16 |
aatattaatcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaa-taatagttttatcaacttggggattaagttggcatttacaaa |
114 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||| | | |||||||| |||||||||| |
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| T |
30431018 |
aatattaatcattaaataagtgagaaa-tcacattcggagaaaataaattggtaaaaataatagttttatcaactttgagcttaagttgacatttacaaa |
30431116 |
T |
|
| Q |
115 |
-gattaatcatcctagatgattgacatatatttaatagattgatccatccctacacttgtgtttgtataagcataaaactcaataaataatttaactaaa |
213 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||| |||||||||| |
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| T |
30431117 |
agattaatcatcttagatgattgacatatatttaatagattgatccatccttacatttgtatttgtataagcataaacctcaataaaatctttaactaaa |
30431216 |
T |
|
| Q |
214 |
tggttaaagaaccaaatatttgtaccacaccatgttatagtt |
255 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
30431217 |
tggttaaagaaccaaacatttgtgccacaccatattatagtt |
30431258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 30415863 - 30416005
Alignment:
| Q |
16 |
aatattaatcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaa-taatagttttatcaacttggggattaagttggcatttacaaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415863 |
aatattaatcattaaataagtgagaaaatcgcattcagagaaaacaaattggtaaaaataatagttttatcaacttggggattaagttggcatttacaaa |
30415962 |
T |
|
| Q |
115 |
gattaatcatcctagatgattgacatatatttaatagattgat |
157 |
Q |
| |
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|
| T |
30415963 |
gattaatcatcctagatgattaacatgtatttaatagattgat |
30416005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 30429314 - 30429544
Alignment:
| Q |
24 |
tcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaataatagttttatcaacttggggattaagttggcatttacaaagattaatca |
123 |
Q |
| |
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||||||||||||||||||||| | ||| | |||| |||| | ||||||||| |||||||| |||| |||| | | | |||||||||| |||| | |
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| T |
30429314 |
tcattaaataagtgagaaaatgatattttgaaaaaaaaaatggtaaaaataataattttatcagtttggatcttaaatggacctttacaaagactaataa |
30429413 |
T |
|
| Q |
124 |
tcctagatgattgacatatatttaatagattgatccatccctacacttgtgtttgtataagcataaaactcaataaataatttaactaaatggttaaaga |
223 |
Q |
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|| |||||||||| || || |||| | ||||||||||||| ||| ||| ||| |||| ||||||| | |||| || |||| ||||||||||||||| |
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| T |
30429414 |
tctaagatgattgagatctaattaagatattgatccatcccaacatttgaatttttatatgcataaaccacaatcaaatctttagctaaatggttaaaga |
30429513 |
T |
|
| Q |
224 |
accaaatatttgtaccacaccatgttatagt |
254 |
Q |
| |
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|||||| |||||| | || |||||||||||| |
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|
| T |
30429514 |
accaaacatttgtgctactccatgttatagt |
30429544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 30431551 - 30431772
Alignment:
| Q |
16 |
aatattaatcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaataatagttttatcaacttggggattaagttggcatttacaaag |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||| |||||||||||||| |||||||||||||| || |||||| | | ||||||||| |
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| T |
30431551 |
aatattaatcattaaataagtgaaaaaatgacgttcaggaaaaacaaattggtataataatagttttat-------ggtcttaagtcgacctttacaaag |
30431643 |
T |
|
| Q |
116 |
attaatcatcctagatgattgacatatatttaatagattgatccatccctacacttgtgtttgtataagcataaaactcaataaataatttaactaaatg |
215 |
Q |
| |
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| ||||||| |||||||||| || | |||| |||| ||||||||| || |||||||| |||||| ||||||||| |||||||||||| |
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| T |
30431644 |
actaatcatgtgagatgattgagatcttcttaagagat--atccatcccaac------gtttgtatt--cataaacctcaataaaatctttaactaaatg |
30431733 |
T |
|
| Q |
216 |
gttaaagaaccaaatatttgtaccacaccatgttatagt |
254 |
Q |
| |
|
||||||||| |||| ||||||||| ||| |||||||||| |
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| T |
30431734 |
gttaaagaaacaaacatttgtaccgcactatgttatagt |
30431772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 30415074 - 30415141
Alignment:
| Q |
22 |
aatcattaaataagtgagaaaatcacattcgaagaaaaca----aattggt-aaaataatagttttat |
84 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
30415074 |
aatcattaaataagtgagaaaatgacattcgaagaaaacaaaccaattggtaaaaataatagttttat |
30415141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 30430014 - 30430085
Alignment:
| Q |
16 |
aatattaatcattaaataagtgagaaaatcacattcgaagaaaacaaattggtaaaa--taatagttttatca |
86 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||| ||||||||||||| |
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| T |
30430014 |
aatattaatcattaaataagtgagaaaatgacattctaaaaaaac-aattggtaaaaagaaatagttttatca |
30430085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 30430714 - 30430764
Alignment:
| Q |
204 |
tttaactaaatggttaaagaaccaaatatttgtaccacaccatgttatagt |
254 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
30430714 |
tttaactaaatggttaaagtaccaagcttttgtaccacaccatgttatagt |
30430764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 30448144 - 30448219
Alignment:
| Q |
16 |
aatattaatcattaaataa---gtgagaaaatcacattcgaagaaaacaaattggtaaa-ataatagttttatcaac |
88 |
Q |
| |
|
||||||||||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
30448144 |
aatattaatcattaaataataagtgagaaa-taatattcggagaaaacaaattggtaaatataatagttttatcaac |
30448219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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