View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_3 (Length: 597)
Name: NF2274_high_3
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 37 - 414
Target Start/End: Original strand, 6224060 - 6224437
Alignment:
| Q |
37 |
aagcaaaattttatcacttgctagagcatagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgtt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224060 |
aagcaaaattttatcacttgctagagcatagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgtt |
6224159 |
T |
|
| Q |
137 |
cttacttctatttctccttgacagccaatattttgtcattcctttgcggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattacc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224160 |
cttacttctatttctccttgacagccaatattttgtcattcctttgcggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattacc |
6224259 |
T |
|
| Q |
237 |
ttctcatatgattttatttgaacaaattttgtaaaatccatgctacttatgaaaactttgaattcatctttggaaacttatgtgtcaaattcgtgtagat |
336 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224260 |
ttctcatatcattttatttgaacaaattttgtaaaatccgtgctacttatgaaatctttgaattcatctttggaaacttatgtgtcaaattcgtgtagat |
6224359 |
T |
|
| Q |
337 |
ttgttatattgaatgtttgttaaaagtgtctttcgtgcactttctcttatgcttctgcattttaatgcacaatttata |
414 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6224360 |
ttgttatattgaatgtttgttaaaagtgtctgtcgtgcactttctcttatgcttctgcatgttaatgcacaatttata |
6224437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 65 - 264
Target Start/End: Original strand, 1693101 - 1693296
Alignment:
| Q |
65 |
tagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgttcttacttctatttctccttgacagccaa |
164 |
Q |
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| T |
1693101 |
tagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgttctt----ctatttctccttgacagccaa |
1693196 |
T |
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| Q |
165 |
tattttgtcattcctttgcggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattaccttctcatatgattttatttgaacaaatt |
264 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |
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| T |
1693197 |
tattttgtcattcctttgtggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattatcttctcatatcattttatttgaccaaatt |
1693296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 473 - 584
Target Start/End: Original strand, 6224496 - 6224607
Alignment:
| Q |
473 |
gcacgtgagtctggtttgcagaggtcacgagatatcctatgagaaccaggggaaagactaaatcaatcattaatctgttgcatacacacatgtttgttgt |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6224496 |
gcacgtgagtctggtttgcagaggtcacgagatatcctatgagagccaggggaaagactacatcaatcattaatctgttgcatacacacatgtttgttgt |
6224595 |
T |
|
| Q |
573 |
atttgcacatct |
584 |
Q |
| |
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||||||||||| |
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| T |
6224596 |
ttttgcacatct |
6224607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 34621029 - 34620833
Alignment:
| Q |
46 |
tttatcacttgctagagcatagagctaaggaatggtaattgatt-tgatcaatacttatactatgaatttgtgctcttttagatttcatgttcttacttc |
144 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| || ||| | |||||||||| | || ||| |||| | ||| ||||||||| |||||||| | |
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| T |
34621029 |
tttatcacttgctagagcatagagctaaagaatggta-ttcattgtaatcaatacttgttctgtgagtttgcgaacttctagatttcacgttcttacctt |
34620931 |
T |
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| Q |
145 |
tatttctccttga-cagccaatattttgtcattcctttgcggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattaccttctc |
241 |
Q |
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|| | | ||| ||||| ||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||| ||||| |||| |
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| T |
34620930 |
tactcgttcttttgcagccgatattttgtcattcctttgtggaggggaagtggttatataacaatgtttgttcaaggtttgataaaagttaccctctc |
34620833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 65 - 264
Target Start/End: Complemental strand, 8774271 - 8774076
Alignment:
| Q |
65 |
tagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgttcttacttctatttctccttgacagccaa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8774271 |
tagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctcttttagatttcatgttctt----ctatttctccttgacagccaa |
8774176 |
T |
|
| Q |
165 |
tattttgtcattcctttgcggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattaccttctcatatgattttatttgaacaaatt |
264 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |
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| T |
8774175 |
tattttgtcattcctttgtggaggggaagtgattatttgacaatgtttgttcaaggtttgataaaaattatcttctcatatcattttatttgaccaaatt |
8774076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 44117587 - 44117445
Alignment:
| Q |
38 |
agcaaaattttatcacttgctagagcatagagctaaggaatggtaattgatttgatcaatacttatactatgaatttgtgctct----tttagatttcat |
133 |
Q |
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|
||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44117587 |
agcaaaactttatcacttgctagagcattgggctaaggaatggtaatcgatttgatcaatacttatactatgaatttgtgctcttttatttagatttcat |
44117488 |
T |
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| Q |
134 |
gttcttacttctatttctccttgacagccaatattttgtcatt |
176 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44117487 |
gttcttacttctatttctccttggcagccaatattttgtcatt |
44117445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 473 - 584
Target Start/End: Original strand, 40909741 - 40909852
Alignment:
| Q |
473 |
gcacgtgagtctggtttgcagaggtcacgagatatcctatgagaaccaggggaaagactaaatcaatcattaatctgttgcatacacacatgtttgttgt |
572 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40909741 |
gcacgtgagtctggtctgcagaggtcacgagaaatcctatgagagccaggggaaagactgaatcaatcattaatctgttgcatacacacatgtttgttgt |
40909840 |
T |
|
| Q |
573 |
atttgcacatct |
584 |
Q |
| |
|
||||||||||| |
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|
| T |
40909841 |
ttttgcacatct |
40909852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 308 - 414
Target Start/End: Original strand, 40909576 - 40909682
Alignment:
| Q |
308 |
ggaaacttatgtgtcaaattcgtgtagatttgttatattgaatgtttgttaaaagtgtctttcgtgcactttctcttatgcttctgcattttaatgcaca |
407 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
40909576 |
ggaaacttatgtgttaaattcgtgtagatttgttatattgaatgtttgttaaaagtgtcagtcgtgcacttcctcttatgcttctgcattttaatgcaca |
40909675 |
T |
|
| Q |
408 |
atttata |
414 |
Q |
| |
|
||||||| |
|
|
| T |
40909676 |
atttata |
40909682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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