View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_31 (Length: 251)
Name: NF2274_high_31
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18728948 - 18728722
Alignment:
| Q |
1 |
ttgatgtggtgtgtgaatcaaatttagctccagaaattatgaacgtggtgttcctttttaaagtccgttaagaaacatggcatccataagaataagagag |
100 |
Q |
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| T |
18728948 |
ttgatgtggtgtgtgaatcaaatttagctccagaaattatgaacgtggtgttcctttttaaagtccgttaagaaacatggcatccataa----------- |
18728860 |
T |
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| Q |
101 |
aaaagcttaaaacttactgcattcatgatagtagaaatgagtgaatatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgt |
200 |
Q |
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| T |
18728859 |
---agcttaaaacttactgtattcatgatagtagaaatgagtcaatatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgt |
18728763 |
T |
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| Q |
201 |
ccacgcagttcggctaatggtgcattcctcggcaagtataa |
241 |
Q |
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| T |
18728762 |
ccacgcagttcggctaatggtgcattcctcagcaagtataa |
18728722 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 39129565 - 39129490
Alignment:
| Q |
146 |
tatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgtccacgcagttcggctaatggtgc |
223 |
Q |
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| T |
39129565 |
tatagaagtataaaagaaaccaaaa--ttgcaagacaatgagacacagtctttgttcacgcagtttgacaaatggtgc |
39129490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 35416090 - 35416130
Alignment:
| Q |
67 |
gttaagaaacatggcatccataagaataagagagaaaagctt |
108 |
Q |
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| T |
35416090 |
gttaagaaacatggcatccataaaaat-agagagaaaagctt |
35416130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 23849910 - 23849866
Alignment:
| Q |
179 |
gacaatgagacacaatctttgtccacgcagttcggctaatggtgc |
223 |
Q |
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| T |
23849910 |
gacaatgagacatgatctttgttcacgcagttcggccaatggtgc |
23849866 |
T |
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