View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_7 (Length: 485)
Name: NF2274_high_7
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Original strand, 38942691 - 38943138
Alignment:
| Q |
16 |
agaatatttggtaaaaactgttttccttttcaaaaaactttcctgaatctacttctacnnnnnnnnctcaactgaatctacacacacaggaaatggcttc |
115 |
Q |
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| T |
38942691 |
agaatatttggtaaaaactgttttccttttcaaaaagctttcctgaatctacttgtacctaaaaaactcaactgaatctacacacagaggaaatggcttc |
38942790 |
T |
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| Q |
116 |
atagtaaaaagaatagacaatcacaacaacctcaacaattcatactatcacaataatctcatctccctttagttgtacacaatcacttcccgttccaaat |
215 |
Q |
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| T |
38942791 |
agagtaaaaagaatagacaatgacaacaacctcaacaattcatactaccacaataatcccacctcc-tttagttgtacacaatcacttcccattccaaat |
38942889 |
T |
|
| Q |
216 |
taccctgcaattcaatcaaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaata |
315 |
Q |
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| T |
38942890 |
taccctgcaattcaatcaaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaata |
38942989 |
T |
|
| Q |
316 |
aaagttccatcgtcaggtatatcagtcagctgagcaatggttttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacggggac |
415 |
Q |
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| T |
38942990 |
aaagttccatcgtcaggtatatcagtcagctgagcaatggttttctttg--catacaa-tcgctaaaacacttcatcaaaagacgaacttacacggggag |
38943086 |
T |
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| Q |
416 |
caagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaa |
467 |
Q |
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| T |
38943087 |
caagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaa |
38943138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 13724013 - 13723893
Alignment:
| Q |
87 |
ctgaatctacacacacaggaaatggcttcatagtaaaaagaatagacaatcacaacaacctcaacaattcatactat--cacaataatctcatctccctt |
184 |
Q |
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||||||||| | ||||||||||||||||| | | |||||| ||| ||||| ||||||||||| | |||||| || |||||||| |||||||| || |
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| T |
13724013 |
ctgaatctaaaaacacaggaaatggcttcttggaaaaaagcatacacaatgttaacaacctcaatagctcatacaattctacaataatttcatctccttt |
13723914 |
T |
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| Q |
185 |
tagttgtacacaatcacttcc |
205 |
Q |
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||| | |||||||||||||| |
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| T |
13723913 |
tagctcaacacaatcacttcc |
13723893 |
T |
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