View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_9 (Length: 478)
Name: NF2274_high_9
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 148 - 460
Target Start/End: Original strand, 27404000 - 27404310
Alignment:
| Q |
148 |
caaaaatggtagttactaaatcacttctagttatgtgatattgttaaaatgatctctatccaatgtgtattgtttgtgtgatgtaaaactaagtaataac |
247 |
Q |
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| T |
27404000 |
caaaaatgctagttactaaatcacttctagtaatgtgat--tgttaaaatgatctctatccaatgtgtattgtttgtgtgatgtaaaactaagtaataac |
27404097 |
T |
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| Q |
248 |
cacttatttcaggaaaagaagaaagaggaggcagaatttaaaatcagaaaagacgcttccgatgctatagaagaacatatcgatgatcaagggatttccc |
347 |
Q |
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| T |
27404098 |
cacttatttcaggaaaagaagaaagaggaggcagaatttgaaatcgcagaagatgcttctgatactatagaagaacatatcgatgatcaagggatttccc |
27404197 |
T |
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| Q |
348 |
tcgcacctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatggcttgttta |
447 |
Q |
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| T |
27404198 |
ttgcgcctttaaacatggaagacatgagacatgcaaagaataaggttgttgaactttaaacactgttcacttcaattgatttagtgttatgacttgttta |
27404297 |
T |
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| Q |
448 |
ttacgggcataag |
460 |
Q |
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| T |
27404298 |
ttacgggcataag |
27404310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 45989475 - 45989514
Alignment:
| Q |
4 |
tggaagtgatcttaaggttcattttgttggtcattctcta |
43 |
Q |
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| T |
45989475 |
tggaagtgatcttaaggttcattttgttggtcattctcta |
45989514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 393
Target Start/End: Original strand, 44936319 - 44936476
Alignment:
| Q |
236 |
ctaagtaataaccacttatttcaggaaaagaagaaagaggaggcagaatttaaaatcagaaaagacgcttccgatgctatagaagaacatatcgatgatc |
335 |
Q |
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| T |
44936319 |
ctaagtaattaccatttattttagacaaagaagaaaaaggtgacagaagttgaaatcttagaagaagcttccattgctaccgaagaagataaagaagatc |
44936418 |
T |
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| Q |
336 |
aagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
393 |
Q |
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| T |
44936419 |
aagtgattgccctcaggcctttaaacatggaggacatgagagaggcaaagaataaggt |
44936476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 45989794 - 45989855
Alignment:
| Q |
332 |
gatcaagggatttccctcgcacctttaaacatggaagacatgagacatgcaaagaataaggt |
393 |
Q |
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| T |
45989794 |
gatcaagtgatttccctccggcctttgaacatggaagacatgagacaggcaaagaataaggt |
45989855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 44927911 - 44927948
Alignment:
| Q |
246 |
accacttatttcaggaaaagaagaaagaggaggcagaa |
283 |
Q |
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| T |
44927911 |
accacttatttcagaaaaagaagaaaaaggaggcagaa |
44927948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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