View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_1 (Length: 1076)
Name: NF2274_low_1
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Original strand, 15600373 - 15600762
Alignment:
| Q |
15 |
aatatccccattctcaacttcattactccgtcgtggtggtgacagtgatggtgatggtggagggcccagcttctcagacacaatttcaccattctcaatt |
114 |
Q |
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| T |
15600373 |
aatatccccattctcaacttcattactccgtcgtggtggtgacagtgatggtgatggtggagggcccagcttctcagacacaatttcaccattctcaatt |
15600472 |
T |
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| Q |
115 |
tcattaatctgctgtgacggcttctcagacacaaactcacccttttcaatttcattattccgcggtggcagcgacagcttcacagaaacaaactcgccat |
214 |
Q |
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| T |
15600473 |
tcattaatctgctgtgacggcttctcagacacaaactcacccttttcaatttcattattccgcggtggcagcgacggcttcacagaaacaaactcgccat |
15600572 |
T |
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| Q |
215 |
tttcaatttcattactctgcggtggcagtggcagcggcaacttctcaaactcaaactccccattctcgagtccactccccggccatgacaaagtccccaa |
314 |
Q |
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| T |
15600573 |
tttcaatttcattactctgcggtggcagtggcagcggcggcttctcaaactcaaactccccattctcgagtccactccccggccacgacaaagtccccaa |
15600672 |
T |
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| Q |
315 |
ttcaccctcttccacttcatcatccacctgcccgcatatttcgccactcttaacaacaccaccattactacccactccacccaacgccaa |
404 |
Q |
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| T |
15600673 |
ttcaccctcttccacttcatcatccacctgcccgcaaatttcgccactcttaacaacaacaccattactacccactccacccaacgccaa |
15600762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 526 - 770
Target Start/End: Original strand, 15600884 - 15601128
Alignment:
| Q |
526 |
aaaccattctcactcttccctccacaactcaccccctccgtcaccgccgccgaattctccaacttctcaacaccattctgcttctgcttctcctcctttt |
625 |
Q |
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| T |
15600884 |
aaaccattctcactcttccctccacaactcaccccctccgtccccgccgccgcattctccaacttctcaacaccattctgcttctgcttctcctcctttt |
15600983 |
T |
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| Q |
626 |
gcaaaaccatgcacgctacacctccatcacccatcgaaaccttcaactacacaattatcaaaaccttcnnnnnnnntacctaatcttcacattcaccagg |
725 |
Q |
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| T |
15600984 |
gcaaaaccatgcacgctacacctccatcacccatcgaaaccttcaactacacaattatcaaaaccttcaaaaaaaaaacctaatcttcacattcaccagg |
15601083 |
T |
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| Q |
726 |
actatcaatactcatacttcacaattctccacaattcaccagctc |
770 |
Q |
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| T |
15601084 |
actatcaatactcatacttcacaattctccacaattcaccagctc |
15601128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 965 - 1062
Target Start/End: Original strand, 15601323 - 15601420
Alignment:
| Q |
965 |
agagatcgagaaaactatggtttacgaaagaaatttgtgtttatgagactctgttttgatgaatgaacgaataaacggagaaaaatcttttgtatttg |
1062 |
Q |
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| T |
15601323 |
agagatcgagaaaactatggcttacgaaagaaatttgtgtttatgagactctgttttgatgaatgaacgaataaaaggagaaaaatcttttgtatttg |
15601420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 836 - 901
Target Start/End: Original strand, 15601194 - 15601259
Alignment:
| Q |
836 |
cgaatgtagggttttgtaaccgctaacaaattcacagaagaagaaaattaccgagaaaacgaatga |
901 |
Q |
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| T |
15601194 |
cgaatgtagggttttgtaaccgctaacaaattcacggaagaagaaaattaccgagaaaacgaatga |
15601259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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