View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_12 (Length: 452)

Name: NF2274_low_12
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_12
NF2274_low_12
[»] chr8 (4 HSPs)
chr8 (6-314)||(38674373-38674681)
chr8 (41-260)||(38669857-38670072)
chr8 (352-436)||(38674251-38674335)
chr8 (352-436)||(38669695-38669779)
[»] chr3 (2 HSPs)
chr3 (7-245)||(2061939-2062177)
chr3 (353-423)||(2061495-2061565)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 38674681 - 38674373
Alignment:
Q  6 gtcgaagaatatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagc 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38674681 gtcgaagaagatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagc 38674582  T
Q  106 actgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38674581 actgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactg 38674482  T
Q  206 cggccggcatgaccgctaaccaccccgattatgcatccgtcagttttcactttcccgccnnnnnnnaggttctattgttttaacaactttatcttgttcc 305  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  38674481 ccgccggcatgaccgctaaccaccccgattatgcatccgtcagttttcactttcccgcctttttttaggttctattgttttaacaactttatcttgttcc 38674382  T
Q  306 gatgatgaa 314  Q
    |||||||||    
T  38674381 gatgatgaa 38674373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 38670072 - 38669857
Alignment:
Q  41 gtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagcactgaacactgtgaccctgttttagtcgctcagaa 140  Q
    |||||||||||||||| || ||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||||   ||||||||| || ||| ||||    
T  38670072 gtcaagaggcggttcattt-gacaagataacggctagattgaa-aaacttagttatggtttaagcactgaacactgg--ccctgttttggttgcttagaa 38669977  T
Q  141 agtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgcggccggcatgaccgctaaccaccccgattatgca 240  Q
    |||||| |||||| |||||||||||||  |||| |||||||||||||||||||||||||||||  | |  |||| ||||||||| ||||| ||||||||     
T  38669976 agtttgcgccggcatttacaaaggcgttgccaccagtcaacttgatgaattagccgctgaaaccaccgttggcaagaccgctaatcaccctgattatgct 38669877  T
Q  241 tccgtcagttttcactttcc 260  Q
    || |||||||||| ||||||    
T  38669876 tctgtcagttttcgctttcc 38669857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 38674335 - 38674251
Alignment:
Q  352 attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatccttttctgaaacgtgagtgggtgtt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38674335 attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatccttttctgaaacgtgagtgggtgtt 38674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 38669779 - 38669695
Alignment:
Q  352 attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatccttttctgaaacgtgagtgggtgtt 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  38669779 attgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatcgtttgctgaaacgtgagtgggtgtt 38669695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 2062177 - 2061939
Alignment:
Q  7 tcgaagaatatgtacgttgttaagagagacggtcgtcaagaggcggttcacttcgacaagataacagcgagattgaagaaactcagttacggtttaagca 106  Q
    |||||||| |||||||||||  ||||||| |||||||||||||||||||  || ||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  2062177 tcgaagaagatgtacgttgtggagagagatggtcgtcaagaggcggttcgttttgacaagataacggcgaggttgcagaaactcagttacggtttaagca 2062078  T
Q  107 ctgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccacaagtcaacttgatgaattagccgctgaaactgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||    
T  2062077 ctgaacactgtgaccctgttttagtcgctcagaaagtttgtgccggcgtttacaaaggcgtcaccaccactcaacttgatgaattagccgctgaaaccgc 2061978  T
Q  207 ggccggcatgaccgctaaccaccccgattatgcatccgt 245  Q
     || |||||||||||||||||||||||||||||||||||    
T  2061977 cgctggcatgaccgctaaccaccccgattatgcatccgt 2061939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 2061565 - 2061495
Alignment:
Q  353 ttgattcagttggctgctaggattgctgtttcaaatctgcacaagaacacactgaaatccttttctgaaac 423  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2061565 ttgattcagttggctggtaggattgctgtttcaaatctgcacaagaacacactggaatccttttctgaaac 2061495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University