View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_14 (Length: 424)
Name: NF2274_low_14
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 24545131 - 24544737
Alignment:
| Q |
19 |
cacacggggccctagttaagcgagaagaaaatcaaattaatatgtgatgagcacatcaaaatgaatgttctgaaatacctacttggctcctgttatattt |
118 |
Q |
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| T |
24545131 |
cacacagggccctagttaagcgagaagaaaatcaaattaatatgtgatgagcacatcaaaatgaatgttctgaaatacctacttggctcctgttatattt |
24545032 |
T |
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| Q |
119 |
ccaatctctaacaacctgaatcctactgcaaaatgatctcactctatatctcaagtcagtgagttgcattctaagagctgcaaaactgaactcggggatc |
218 |
Q |
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| T |
24545031 |
ccaatctctaacaatttgaatcctactgcaaaatgatctcactctatatctcaagtcagtgagttgcattctaagagctgcaaaactgaactcggggatc |
24544932 |
T |
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| Q |
219 |
tttcccatatataaactttttcataactcataaaccgtacctgggtgaggatacgaataaattccaaatttaacgtgtacagaaatatttccacattaaa |
318 |
Q |
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| T |
24544931 |
tttctcatatataaacttttccagaactcataaaccgtacctgggtgaggctacgaataaattccaaatttaatgtgtacaaaaatatttccacattaaa |
24544832 |
T |
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| Q |
319 |
ccaaccagaatcatcagaataagttcaatgtcgctgcaaccttggctcattgtttcataa-tttgatatttaccataattgttcccttcaacctt |
412 |
Q |
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| T |
24544831 |
ccaaccagaatcatccgaataagttcaatgtcccttcaaccttggcttattgtttcataattttgatatttaccataattgttcccttcaacctt |
24544737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 365
Target Start/End: Complemental strand, 24533977 - 24533869
Alignment:
| Q |
260 |
tgggtgaggatacgaataaattccaaatttaacgtgtacagaaatatttccacatta---aaccaaccagaatcatcagaataagttcaatgtcgctgca |
356 |
Q |
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||||||| | ||| ||||||||||||||||||| | ||| ||||||||| ||||| |||| || |||||||||||| ||||||||||||| ||||| |
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| T |
24533977 |
tgggtgaagctaccaataaattccaaatttaacacgcacacaaatatttcaacattttgcaaccgactagaatcatcagagtaagttcaatgtccctgca |
24533878 |
T |
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| Q |
357 |
accttggct |
365 |
Q |
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| T |
24533877 |
acattggct |
24533869 |
T |
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