View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_15 (Length: 420)
Name: NF2274_low_15
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 34680307 - 34680615
Alignment:
| Q |
1 |
caatactatgcaaaacgaggaaagcattatatagtcagcacaatccaatttgggtaagaaaatttatgtttatttttatttacaatgttagaaaattatg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680307 |
caatactatgcaaaacgagaaaagcattatatagtcagcacaatccaatttgggtaagaaaatttatgtttatttttatttacaatgttagaaaattatg |
34680406 |
T |
|
| Q |
101 |
tgcat----------agtttgtaaaaataagttatgttaaattttaccaattttacgatcagccaatgatccactacttaactatacaacttttaactat |
190 |
Q |
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| T |
34680407 |
tgcatttcgatatatagtttgtaaaaataagttatgttaaattttaccaattttacgatcagccaatgatccactacttaactatacaacttttaactat |
34680506 |
T |
|
| Q |
191 |
acaattgacctattcatccaatctatttacttgatcatgggacctaatcattaaacctaatcatttccttcctgtaggtacaattctagtaattaagaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680507 |
acaattgacctattcatccaatctatttacttgatcatgggacctaatcattaaacctaatcatttccttcctgtaggtacaattctagtaattaagaca |
34680606 |
T |
|
| Q |
291 |
tttttgttt |
299 |
Q |
| |
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||||||||| |
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| T |
34680607 |
tttttgttt |
34680615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 293 - 417
Target Start/End: Original strand, 34680660 - 34680784
Alignment:
| Q |
293 |
tttgttttattaacgttatgattcctagaggatgagaaccttgataattcggagtttaatcggaagataaataatacttgataggtaagtaaaatctaat |
392 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
34680660 |
tttgtttttttaacgttatgattcctagaggatgagaaccttgataattcggagtttaatcggaagataaataatatttgataggtaaataaaatctaat |
34680759 |
T |
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| Q |
393 |
taataattgtttcatccaaaatcga |
417 |
Q |
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||||||||||||||||||||||||| |
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| T |
34680760 |
taataattgtttcatccaaaatcga |
34680784 |
T |
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