View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_16 (Length: 401)

Name: NF2274_low_16
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_16
NF2274_low_16
[»] chr3 (9 HSPs)
chr3 (19-386)||(36146464-36146831)
chr3 (19-378)||(36075097-36075456)
chr3 (250-359)||(36146443-36146552)
chr3 (39-218)||(36156509-36156688)
chr3 (49-218)||(36162540-36162709)
chr3 (287-359)||(36075068-36075140)
chr3 (250-310)||(36075069-36075129)
chr3 (249-310)||(36146444-36146505)
chr3 (281-353)||(36146362-36146434)
[»] chr6 (5 HSPs)
chr6 (19-381)||(26530191-26530553)
chr6 (252-386)||(26530568-26530701)
chr6 (261-383)||(26530529-26530651)
chr6 (28-207)||(26525807-26525986)
chr6 (346-386)||(26530470-26530510)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 36146831 - 36146464
Alignment:
Q  19 tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36146831 tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagaattgaa 36146732  T
Q  119 gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36146731 gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 36146632  T
Q  219 aaattcttggtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  36146631 aaattcttggtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggttcagatgttaccgaaaatttaag 36146532  T
Q  319 ttccccacctaaatgcaatggaggtcaagatgctaccgaagatttaggttcccctcctaagtgcaatg 386  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36146531 ttccccatctaaatgcaatggaggtcaagatgctaccgaagatttaggttctcctcctaagtgcaatg 36146464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 36075456 - 36075097
Alignment:
Q  19 tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa 118  Q
    |||||||||||||||   | |||||||| ||||| ||||||| |||| | |||||||||| ||||||||||||||||||||||   ||  || |||||||    
T  36075456 tattcaaaggcatcccagcgcagagcttaatgaattttgtcagaagagaggtctcaagttgcaattcagagatttgtggaaagtatctgagatagttgaa 36075357  T
Q  119 gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 218  Q
    || ||||||| |||||| || |||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  36075356 gttcttataagtgaggaattggttggaagtggcaagtgtggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaatatatgaaaa 36075257  T
Q  219 aaattcttggtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaag 318  Q
     ||   |||||||||| || ||||||| ||| |||| |||||||||||| ||||| ||| |||  |||||||||||||||| ||||| |||| |||||||    
T  36075256 gaaaatttggtataagtacatctacaagagatgatgctaccgaagattttgattctcctcctagatgcaatggaggtccagctgctatcgaagatttaag 36075157  T
Q  319 ttccccacctaaatgcaatggaggtcaagatgctaccgaagatttaggttcccctcctaa 378  Q
    ||  ||| ||||||  |||||||||  |||||||||||||||||||||||||||| ||||    
T  36075156 ttttccatctaaatataatggaggttcagatgctaccgaagatttaggttccccttctaa 36075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 36146552 - 36146443
Alignment:
Q  250 agatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagat 349  Q
    ||||||||||||| |||||  |||||| ||||| ||||||||||||| ||||||||||||| ||||| |||| || ||||| |||||||||| || ||||    
T  36146552 agatgttaccgaaaatttaagttccccatctaaatgcaatggaggtcaagatgctaccgaagatttaggttctcctcctaagtgcaatggagatctagat 36146453  T
Q  350 gctaccgaag 359  Q
    |||| |||||    
T  36146452 gctatcgaag 36146443  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 218
Target Start/End: Complemental strand, 36156688 - 36156509
Alignment:
Q  39 cagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtt 138  Q
    |||||||||| ||||||||||| |||||||   | || |||||||||  ||| |||||| || |  ||||||   |||| ||| | || |||||| | ||    
T  36156688 cagagcttcaagaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtgggaaaaatctatgaacattgatgtcttcatcaatgagaaatt 36156589  T
Q  139 tgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 218  Q
    ||||||||| ||   |||||||||||||||||| ||||||||  |||| || ||||||||||||||||| ||||| ||||    
T  36156588 tgttggaagaggcacttatggctctaagaaagacattgcacattatagagctgcaaaaaatgctttggataatatagaaa 36156509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 36162709 - 36162540
Alignment:
Q  49 tgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttataaatgaggagtttgttggaagt 148  Q
    |||||||||||| |||||||   | || |||||||||  ||| |||||||||||  ||||||   |||| ||| ||||||||||| | |||||||||||     
T  36162709 tgaagtttgtcagaagaaaaaattgaatttacaattcgtagacttgtggaaagaatctatgaacattgatgtctttataaatgagaaatttgttggaaga 36162610  T
Q  149 ggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 218  Q
    ||   |||||||||||||||||| |||||||   |||| || ||||| ||||||||| | ||||| ||||    
T  36162609 ggcacttatggctctaagaaagacattgcacgttatagagctgcaaagaatgctttgaataatatagaaa 36162540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 36075140 - 36075068
Alignment:
Q  287 aatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgctaccgaag 359  Q
    ||||||||| |||||||||||||| ||||| |||||||  ||||||| || ||||||| ||||||||||||||    
T  36075140 aatggaggttcagatgctaccgaagatttaggttccccttctaaatgtaacggaggtccagatgctaccgaag 36075068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 36075129 - 36075069
Alignment:
Q  250 agatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaa 310  Q
    ||||| |||||||||||||| |||||||||||| || || |||||||||||||||||||||    
T  36075129 agatgctaccgaagatttaggttccccttctaaatgtaacggaggtccagatgctaccgaa 36075069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 36146505 - 36146444
Alignment:
Q  249 aagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaa 310  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||| || |||||||| ||||    
T  36146505 aagatgctaccgaagatttaggttctcctcctaagtgcaatggagatctagatgctatcgaa 36146444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 36146434 - 36146362
Alignment:
Q  281 aagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgcta 353  Q
    |||||||||||||| ||||||| ||||||| ||||| |||  |  | ||||||||||||||||| ||||||||    
T  36146434 aagtgcaatggaggcccagatgttaccgaagatttaggttttcttcataaatgcaatggaggtccagatgcta 36146362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 26530191 - 26530553
Alignment:
Q  19 tattcaaaggcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaa 118  Q
    |||||||||||||||  |  |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26530191 tattcaaaggcatccgatggcagagcttcatgaagtttgtcacaataaaagactcaagttacaattcagagatttgtggaaagagtctatgagagttgaa 26530290  T
Q  119 gtccttataaatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttggaaaatatggaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  26530291 gtccttataaatgaggagtttgttggaagtggtgtttatggttctaagaaagaaattgcacgcaatagggcagcaaaaaatgttttgcaaaatatggaaa 26530390  T
Q  219 aaattcttggtataagcacgtctacaaaagaagatgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaag 318  Q
       || ||||||||||  | ||||| || |||| || |||| |||||||||||| ||||||||||||| ||| | || |||||||||||||| |||||||    
T  26530391 ttttttttggtataagtgcatctaccaacgaagttgctaccaaagatttagatttcccttctaagtgcgatgaaagttcagatgctaccgaagatttaag 26530490  T
Q  319 ttccccacctaaatgcaatggaggtcaagatgctaccgaagatttaggttcccctcctaagtg 381  Q
    ||||| |||||| ||||||||||||| | ||||||   |||| |||  |||||||||||||||    
T  26530491 ttccctacctaagtgcaatggaggtccaaatgctattaaagacttacattcccctcctaagtg 26530553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 386
Target Start/End: Original strand, 26530568 - 26530701
Alignment:
Q  252 atgttaccgaagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgc 351  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||| || ||||| ||| ||||||||| |||| |||||||  ||||||    
T  26530568 atgttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaagatttaggtttcccacctaagtgcattggaggttcagatgc 26530667  T
Q  352 taccgaagatttaggttcccctcctaagtgcaatg 386  Q
    | |||||||||| |||| ||||  |||||||||||    
T  26530668 tgccgaagatttgggtttccct-ataagtgcaatg 26530701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 383
Target Start/End: Original strand, 26530529 - 26530651
Alignment:
Q  261 aagatttagattccccttctaagtgcaatggaggtccagatgctaccgaaaatttaagttccccacctaaatgcaatggaggtcaagatgctaccgaaga 360  Q
    |||| ||| |||||||| |||||||  ||||| ||||| ||| || |||| ||||| ||||||| ||||| ||||||||||||| |||||||||| ||||    
T  26530529 aagacttacattcccctcctaagtgtgatggaagtccaaatgttatcgaagatttaggttcccctcctaagtgcaatggaggtctagatgctacccaaga 26530628  T
Q  361 tttaggttcccctcctaagtgca 383  Q
    |||||||| ||| ||||||||||    
T  26530629 tttaggtttcccacctaagtgca 26530651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 26525807 - 26525986
Alignment:
Q  28 gcatccagtcacagagcttcatgaagtttgtcaaaagaaaagtctcaagttacaattcagagatttgtggaaagagactatgagagttgaagtccttata 127  Q
    |||||| |||||||||||||||||||||||||| |||||||   | || ||||||||   ||| |||||| || |  | ||||   |||| ||| | ||     
T  26525807 gcatcccgtcacagagcttcatgaagtttgtcagaagaaaaaatttaatttacaatttgtagacttgtgggaaaaatcaatgaacattgatgtcttcatc 26525906  T
Q  128 aatgaggagtttgttggaagtggtgtttatggctctaagaaagaaattgcacacaatagggcagcaaaaaatgctttgga 207  Q
    |||||| | ||||||||||| ||   |||||||||||||||||| |||| |||  |||| || |||||||||||||||||    
T  26525907 aatgagaaatttgttggaagaggcacttatggctctaagaaagacattgtacattatagagctgcaaaaaatgctttgga 26525986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 26530470 - 26530510
Alignment:
Q  346 agatgctaccgaagatttaggttcccctcctaagtgcaatg 386  Q
    ||||||||||||||||||| ||||||  |||||||||||||    
T  26530470 agatgctaccgaagatttaagttccctacctaagtgcaatg 26530510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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