View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_17 (Length: 391)
Name: NF2274_low_17
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 24544760 - 24544387
Alignment:
| Q |
1 |
accataattgttcccttcaaccttggcttattgctgaagttcaatgtacctcgtttttcttgcaactattggattgttccatatgattcacgtaattatt |
100 |
Q |
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| T |
24544760 |
accataattgttcccttcaaccttggcttattgcttaagttcaatgtacctcgtttttcttgcaattattgaattcttccatatgattcacgtaattatt |
24544661 |
T |
|
| Q |
101 |
tgtagtggcaaaatcatctgttcacgacgcttgaaaaagacaagaacgtgtatacaattaaaagtgcatttaatataaacctctcaaagaaggttttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24544660 |
tgtagtggcaaaatcatctgttcacgacgcttgaaaaagacaagaacgtgtatacaattaaaagtgcatttaatataaacctctcaaagaaggttttttc |
24544561 |
T |
|
| Q |
201 |
ttgtgtaaacacaaagagctaagcacattatttggatatacactaaaaaatagtaatatttaatttcttttgtgtgtatcaaaaagaagtttccaaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24544560 |
ttgtgtaaacacaaagagctaagcacattatttggatatacactaaaaaatagtaatatttaatttctttagtgtgtatcaaaaagaagtttccaaatgt |
24544461 |
T |
|
| Q |
301 |
aatcnnnnnnngaagtgtccaaatctgtggtctaaataagaagaatattccctctcaaatgaaaaatagcccaa |
374 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24544460 |
aatcaaaaaaagaagtgtccaaatctgtggtctaaataagaagaatattccctctcaaatgaaaaatagcccaa |
24544387 |
T |
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