View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2274_low_20 (Length: 367)
Name: NF2274_low_20
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 90 - 350
Target Start/End: Original strand, 8525319 - 8525570
Alignment:
| Q |
90 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaa |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
|
| Q |
190 |
cgcaacatctatatttatatccaaattggaaatacaatattttcagaaacaatatttagtgattgtttttccttggtggaccaacacatagcaacataaa |
289 |
Q |
| |
|
| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataaa |
8525507 |
T |
|
| Q |
290 |
taattgttaatatttctattggaatctatggctggagaatgtcgatccaca--tgaaatatat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |
|
|
| T |
8525508 |
taattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatat |
8525570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 8528833 - 8528886
Alignment:
| Q |
296 |
ttaatatttctattggaatcta-tggctggagaatgtcgatccacatgaaatat |
348 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||| |||| |||||| |
|
|
| T |
8528833 |
ttaatatttctattgggatctaatggctggagaatgtctatcaacataaaatat |
8528886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
111 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatc |
210 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||| |||| || |||| | ||||||||| | |
|
|
| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
|
| Q |
211 |
caaattg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
25520652 |
caaattg |
25520646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 12251659 - 12251721
Alignment:
| Q |
289 |
ataattgttaatatttctattggaatctatggctggagaatgtcgatccacatgaaatatatg |
351 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
12251659 |
ataattgttactatttctatttgaatctatggatggagaatgtctatccacataaaatatatg |
12251721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
| Q |
107 |
aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat |
180 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||| | |||| |||||| ||||||||||||||| |
|
|
| T |
12250641 |
aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat |
12250710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 42125916 - 42125982
Alignment:
| Q |
159 |
gaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatccaaattggaaataca |
225 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||| | ||||||||| |||||||| ||||||| |
|
|
| T |
42125916 |
gaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University