View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_25 (Length: 327)

Name: NF2274_low_25
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_25
NF2274_low_25
[»] chr2 (1 HSPs)
chr2 (19-316)||(7372631-7372924)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 7372924 - 7372631
Alignment:
Q  19 aggtattgaatgtattttctctgagacaagagaattgaaccaaaagacaagtatttaacttcaagaccttgaaaatagtccaatttgccaagtttctttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7372924 aggtattgaatgtattttctctgagacaagagaattgaaccaaaagacaagtatttaacttcaagaccttgaaaatagtccaatttgccaagtttcttta 7372825  T
Q  119 gagcaaattgattattcagctgtgagtgagatcttgaatgagattacgagaagaggtggagtattaatcaaaatatcatccacttaaactaaaacataga 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7372824 gagcaaattgattattcagctgtgaatgagatcttgaatgagattacgagaagaagtggagtattaatcaaaatatcatccacttaaactaaaacataga 7372725  T
Q  219 ggacaatagcgttcttatgaagnnnnnnnntgagaagagatggatcacatccgctgcgcctaaaccaatttgaagcaaaaaagatatcgagcattcat 316  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7372724 ggacaatagcgttcttatgaa----aaaaatgagaagagatggatcacatccgctgcgcctaaaccaatttgaagcaaaaaagatattgagcattcat 7372631  T

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