View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_26 (Length: 323)

Name: NF2274_low_26
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_26
NF2274_low_26
[»] chr5 (4 HSPs)
chr5 (13-314)||(26105387-26105688)
chr5 (151-229)||(2243292-2243370)
chr5 (151-220)||(39730293-39730360)
chr5 (148-229)||(41264547-41264628)
[»] chr1 (5 HSPs)
chr1 (151-229)||(52432682-52432760)
chr1 (162-229)||(68129-68196)
chr1 (150-229)||(38839637-38839716)
chr1 (151-229)||(10775038-10775116)
chr1 (151-208)||(46080992-46081049)
[»] chr7 (4 HSPs)
chr7 (151-211)||(34891554-34891614)
chr7 (151-229)||(23944097-23944175)
chr7 (151-220)||(32138871-32138940)
chr7 (151-205)||(34891386-34891440)
[»] chr4 (4 HSPs)
chr4 (163-227)||(25062352-25062416)
chr4 (151-229)||(20512803-20512881)
chr4 (152-208)||(22050719-22050775)
chr4 (151-211)||(15131569-15131629)
[»] chr2 (2 HSPs)
chr2 (151-207)||(16576269-16576325)
chr2 (151-209)||(38576933-38576991)
[»] chr3 (4 HSPs)
chr3 (151-222)||(20519279-20519350)
chr3 (151-220)||(39341220-39341289)
chr3 (151-226)||(46303391-46303465)
chr3 (151-203)||(42091793-42091845)
[»] chr8 (5 HSPs)
chr8 (151-209)||(6630535-6630593)
chr8 (151-205)||(32166635-32166689)
chr8 (151-229)||(35574616-35574694)
chr8 (151-229)||(37010321-37010399)
chr8 (63-127)||(39280914-39280978)
[»] chr6 (3 HSPs)
chr6 (151-192)||(23577172-23577213)
chr6 (151-192)||(32047195-32047236)
chr6 (151-227)||(32342621-32342697)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 26105688 - 26105387
Alignment:
Q  13 atgtataacttgttttttctacgttaagccttgatgaattggtggtaattatttacctcaatcaacgaaaaatctccattgctttatctttattcttaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||   || ||||||||| ||||||||||||||||||||||||||||||| ||    
T  26105688 atgtataacttgttttttctacgttaagccttgatgaattgatggtaatt---tatctcaatcaatgaaaaatctccattgctttatctttattctttaa 26105592  T
Q  113 atctattaccatttttggactggt----gtcatacgtgaacaattttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctcca 208  Q
    || |||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26105591 atttattaccatttttggactggtataggtcatacgtgaacaatttttatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctcca 26105492  T
Q  209 ttttctttgttccataatcgagaatccaatagggataaataacccacaattcatcaagggtaatgtattctgattttattcttacaagcaattactattt 308  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||| |||||    
T  26105491 ttttttttgttccataatcgagaatccaataggggtaaataacccacaattcatcaagggtaatatattttgatttt-ttcttacaatcaattaatattt 26105393  T
Q  309 tcatct 314  Q
    ||||||    
T  26105392 tcatct 26105387  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 2243370 - 2243292
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| ||||||||||||||||| ||| |||||||||  ||||||||||||||| ||||| |||| | ||||||    
T  2243370 attttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcga 2243292  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 39730360 - 39730293
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttc 220  Q
    |||||||||| ||||||||||||||| | |||||| ||||||| |||  |||||| ||||| ||||||||    
T  39730360 attttcatctcaagaacatcaaactttttcatctctttcatttaaca--tgatcttcatttactttgttc 39730293  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 41264547 - 41264628
Alignment:
Q  148 acaattttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    ||||||||||| | |||||||||||| |||| |||||| ||||||| || || ||| ||||| || ||||||| | ||||||    
T  41264547 acaattttcatatcaagaacatcaaatttcttcatctctttcatttaacttgagatttccatattttttgttctaaaatcga 41264628  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 52432682 - 52432760
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||| |  ||||||| ||||||||    
T  52432682 attttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcga 52432760  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 68129 - 68196
Alignment:
Q  162 aagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||| || || |||||| ||||||    
T  68129 aagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcga 68196  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 38839716 - 38839637
Alignment:
Q  150 aattttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    ||||||||||| ||||||||||||| ||| ||||| |||||||  |||||||||||  || ||||| |||||| ||||||    
T  38839716 aattttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatcttgatcttcttcgttccacaatcga 38839637  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 10775038 - 10775116
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    ||||||||||  ||||||||||| |||| | |||  ||||||  ||||||||||| ||||||||| |||||||||||||    
T  10775038 attttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcgttccataatcga 10775116  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 46080992 - 46081049
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctcca 208  Q
    |||||||||| |||||||| |||||||| ||||||||||| |  |||||| |||||||    
T  46080992 attttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctcca 46081049  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 34891554 - 34891614
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattt 211  Q
    ||||| |||| |||||||||||| |||| |||||||||||||  |||||||||||||||||    
T  34891554 attttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccattt 34891614  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 23944097 - 23944175
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| ||||||||||||||||| | |||| ||||||  ||||||||| ||||| | |||| ||||| ||||||    
T  23944097 attttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcga 23944175  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 32138940 - 32138871
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttc 220  Q
    |||||||||| |||||||||||| |||| |||||||||| ||  |||||| |||||||| ||||| ||||    
T  32138940 attttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttc 32138871  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 34891386 - 34891440
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatct 205  Q
    |||||||| | |||||||||||||||||  |||| |||||||| |||||||||||    
T  34891386 attttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 25062352 - 25062416
Alignment:
Q  163 agaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatc 227  Q
    |||||||||||||||| ||||| |||||||  ||||||||||| ||| | |||||||||||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatc 25062416  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 20512881 - 20512803
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| |  |||||||||||||| ||||| |||||||| |||||| |||||||| | ||| ||| |||||||||    
T  20512881 attttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcga 20512803  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 22050719 - 22050775
Alignment:
Q  152 ttttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctcca 208  Q
    |||| |||| || |||||||||||||| ||| |||||||||| ||||||||||||||    
T  22050719 ttttaatctcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca 22050775  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 15131629 - 15131569
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattt 211  Q
    ||||| |||| |||||||||||| |||| |||||||||||||   ||||||||||| ||||    
T  15131629 atttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctattt 15131569  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 16576269 - 16576325
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctcc 207  Q
    |||||| ||| ||||||||||||||||| |||||||||||||  |||||||||||||    
T  16576269 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 16576325  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 38576991 - 38576933
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccat 209  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||  ||||||||| |||||    
T  38576991 attttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccat 38576933  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 20519350 - 20519279
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttcca 222  Q
    |||||||||| |||||| ||||| |||| |||||| ||||||  ||||||||||||||| | ||||||||||    
T  20519350 attttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttcca 20519279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 39341220 - 39341289
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttc 220  Q
    |||||||||| ||||| ||||||||| | |||||||||||||  ||||| ||||||||||| ||| ||||    
T  39341220 attttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttc 39341289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 46303391 - 46303465
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataat 226  Q
    ||||| ||||| ||| |||||||||||| ||||| ||| |||  |||||||||||||| ||||||||||| |||||    
T  46303391 atttttatctatagagcatcaaacttcttcatcttctttattcaacatgtgatctcca-tttctttgttctataat 46303465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 42091845 - 42091793
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgat 203  Q
    |||||||||| || |||||||||||| | |||||| ||||||| |||||||||    
T  42091845 attttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 6630593 - 6630535
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccat 209  Q
    |||||||||| |||| ||| ||| |||| |||||||||||||| ||| |||||||||||    
T  6630593 attttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccat 6630535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 32166689 - 32166635
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatct 205  Q
    |||||||||| ||||||||||||||||| ||||||||| |||  |||||| ||||    
T  32166689 attttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatct 32166635  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 35574694 - 35574616
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| |||||||||||| || | |||||| ||||||  |||||| |||||||| || || |||||| ||||||    
T  35574694 attttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcga 35574616  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 37010399 - 37010321
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatcga 229  Q
    |||||||||| || |||||||||||| | ||| || ||||||| |||||||||||| || | |||  ||||||||||||    
T  37010399 attttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcga 37010321  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 39280914 - 39280978
Alignment:
Q  63 atttacctcaatcaacgaaaaatctccattgctttatctttattcttaaaatctattaccatttt 127  Q
    ||||||| | ||||| |||||||| || || ||| ||||||||||||||||||  ||||||||||    
T  39280914 atttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccatttt 39280978  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 23577172 - 23577213
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatt 192  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  23577172 attttcatctcaaaaacatcatacttctccatctccttcatt 23577213  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 32047195 - 32047236
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatt 192  Q
    |||||||||| ||||||||||||||||| |||||| ||||||    
T  32047195 attttcatctcaagaacatcaaacttcttcatctcattcatt 32047236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 32342621 - 32342697
Alignment:
Q  151 attttcatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccattttctttgttccataatc 227  Q
    |||||||||| || |||||||||||| | |||||| ||||||  ||||| |||||| ||||| || |||||| ||||    
T  32342621 attttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatc 32342697  T

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