View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_27 (Length: 305)
Name: NF2274_low_27
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_27 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 43435386 - 43435663
Alignment:
| Q |
18 |
gaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagtt |
117 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
43435386 |
gaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagtt |
43435485 |
T |
|
| Q |
118 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
217 |
Q |
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|||||||||||||| || |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43435486 |
gctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaattggatcttaatacttacatta |
43435585 |
T |
|
| Q |
218 |
agatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
295 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435586 |
agatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
43435663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 43443580 - 43443857
Alignment:
| Q |
18 |
gaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagtt |
117 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
43443580 |
gaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagtt |
43443679 |
T |
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| Q |
118 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
217 |
Q |
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|||||||||||||| || |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43443680 |
gctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaattggatcttaatacttacatta |
43443779 |
T |
|
| Q |
218 |
agatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
295 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43443780 |
agatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
43443857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 43426881 - 43427158
Alignment:
| Q |
18 |
gaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagtt |
117 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||| ||||||||||||||| |
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| T |
43426881 |
gaaagagcttcgaaatagtcctttaaaggcttataagttttttcattgggttggaaagcaatctggttatctacagaatacagtgacttataatgcagtt |
43426980 |
T |
|
| Q |
118 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
217 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43426981 |
gctagagttcttcctagaatggagtcaattgagaagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
43427080 |
T |
|
| Q |
218 |
agatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
295 |
Q |
| |
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|||||||||||||||||| ||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
43427081 |
agatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagctttacgagcatatgatggatagttcat |
43427158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 43422303 - 43422580
Alignment:
| Q |
18 |
gaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagtt |
117 |
Q |
| |
|
||||||||||||| | |||||||||||| ||| || |||||| |||||||||||||||||||| ||||||||| ||| | || ||||| ||||||||| |
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| T |
43422303 |
gaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatcaacataatgctgtgacttacaatgcagtt |
43422402 |
T |
|
| Q |
118 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
217 |
Q |
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|||||||||||| |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||| || | |
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| T |
43422403 |
gctagagttcttgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtgtgaattatgaattggagattgatacttatatga |
43422502 |
T |
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| Q |
218 |
agatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
295 |
Q |
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||||| | | |||| || ||||||| |||||||| |||||||||| |||||||| |||| |||||||||| |||||| |
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| T |
43422503 |
agataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagctttacgagcttatgatggatggttcat |
43422580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 20866 - 21126
Alignment:
| Q |
18 |
gaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagtt |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20866 |
gaaagagcttcgagatagtcctttaaaggcttataagttttttcattgggttggaaagaaatctagttatcaacggaatacagttacttataatgcagtt |
20965 |
T |
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| Q |
118 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |
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| T |
20966 |
gctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagacgaagagtgtctgtcatgaattgg-----------------a |
21048 |
T |
|
| Q |
218 |
agatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21049 |
ggatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgatggatagttcat |
21126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 254
Target Start/End: Complemental strand, 40186396 - 40186180
Alignment:
| Q |
35 |
gtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctagagttcttcctag |
134 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| ||| ||||| ||||||||| ||| |
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| T |
40186396 |
gtcctttaaaggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgacttacaattatgttgcaagagttcttgctaa |
40186297 |
T |
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| Q |
135 |
agtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagctt |
234 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
40186296 |
gatggactcaattgaggagttttggagtatc---gaggagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagctt |
40186200 |
T |
|
| Q |
235 |
caaaagaataagatgatgga |
254 |
Q |
| |
|
||| |||||| ||||||||| |
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|
| T |
40186199 |
caagagaataggatgatgga |
40186180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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