View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_29 (Length: 297)

Name: NF2274_low_29
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_29
NF2274_low_29
[»] chr8 (27 HSPs)
chr8 (26-136)||(1566011-1566121)
chr8 (26-136)||(13474652-13474762)
chr8 (26-136)||(4203317-4203427)
chr8 (26-128)||(19238320-19238422)
chr8 (26-128)||(19311504-19311606)
chr8 (50-136)||(9479232-9479318)
chr8 (26-136)||(38776498-38776607)
chr8 (43-108)||(1554281-1554346)
chr8 (62-127)||(3469002-3469067)
chr8 (236-287)||(10335362-10335413)
chr8 (19-94)||(42443028-42443103)
chr8 (47-133)||(34347614-34347700)
chr8 (62-127)||(42907053-42907118)
chr8 (239-287)||(39823450-39823498)
chr8 (76-135)||(8625125-8625190)
chr8 (66-136)||(44374415-44374485)
chr8 (242-286)||(43899110-43899154)
chr8 (60-110)||(15540552-15540602)
chr8 (234-287)||(28321009-28321062)
chr8 (171-231)||(1565914-1565976)
chr8 (171-231)||(8625027-8625089)
chr8 (237-280)||(11796670-11796713)
chr8 (171-231)||(44374520-44374582)
chr8 (26-54)||(9478973-9479001)
chr8 (26-54)||(40304621-40304649)
chr8 (86-118)||(42443289-42443321)
chr8 (24-56)||(42807893-42807925)
[»] chr3 (26 HSPs)
chr3 (26-136)||(6475341-6475451)
chr3 (26-136)||(6746489-6746599)
chr3 (26-136)||(6515467-6515577)
chr3 (26-139)||(45713979-45714092)
chr3 (29-136)||(8814584-8814691)
chr3 (26-136)||(44682393-44682502)
chr3 (28-136)||(22896690-22896798)
chr3 (28-136)||(27077846-27077954)
chr3 (28-136)||(27083643-27083751)
chr3 (234-287)||(54383662-54383715)
chr3 (62-127)||(30991849-30991914)
chr3 (234-282)||(41409797-41409845)
chr3 (26-85)||(31152912-31152971)
chr3 (26-136)||(25891573-25891683)
chr3 (26-135)||(27065476-27065580)
chr3 (95-136)||(42370823-42370864)
chr3 (26-82)||(48117038-48117094)
chr3 (26-132)||(31153660-31153766)
chr3 (35-132)||(46970664-46970759)
chr3 (236-287)||(38360172-38360223)
chr3 (172-235)||(30991741-30991806)
chr3 (242-286)||(8913957-8914001)
chr3 (171-231)||(6515370-6515432)
chr3 (26-56)||(14986053-14986083)
chr3 (62-99)||(49080714-49080751)
chr3 (26-54)||(45713723-45713751)
[»] chr2 (11 HSPs)
chr2 (26-136)||(31659558-31659668)
chr2 (27-136)||(3670565-3670673)
chr2 (32-136)||(13829677-13829781)
chr2 (43-136)||(6831386-6831479)
chr2 (26-135)||(10862756-10862865)
chr2 (51-135)||(14798945-14799029)
chr2 (73-135)||(36911431-36911493)
chr2 (27-80)||(3677479-3677532)
chr2 (93-136)||(39443444-39443487)
chr2 (26-118)||(29513267-29513362)
chr2 (26-113)||(29404174-29404258)
[»] chr1 (22 HSPs)
chr1 (26-136)||(508446-508556)
chr1 (26-135)||(13413805-13413914)
chr1 (26-136)||(37553341-37553451)
chr1 (26-132)||(49901542-49901648)
chr1 (41-136)||(30694539-30694634)
chr1 (62-127)||(27055921-27055986)
chr1 (62-127)||(46435205-46435270)
chr1 (235-286)||(6797516-6797567)
chr1 (60-135)||(52594849-52594924)
chr1 (236-286)||(1141568-1141618)
chr1 (62-127)||(29119091-29119156)
chr1 (62-127)||(35760243-35760308)
chr1 (27-135)||(36018167-36018275)
chr1 (236-287)||(50797990-50798041)
chr1 (63-135)||(46832709-46832782)
chr1 (235-280)||(47030427-47030472)
chr1 (22-53)||(37553117-37553148)
chr1 (172-235)||(35760352-35760417)
chr1 (172-235)||(46435314-46435379)
chr1 (29-85)||(24657088-24657144)
chr1 (26-54)||(32151783-32151811)
chr1 (26-54)||(52853902-52853930)
[»] chr7 (21 HSPs)
chr7 (26-136)||(1507384-1507494)
chr7 (26-135)||(24790818-24790927)
chr7 (26-135)||(2658317-2658426)
chr7 (26-136)||(9963812-9963918)
chr7 (60-136)||(23102797-23102873)
chr7 (26-135)||(33473738-33473847)
chr7 (26-136)||(10982350-10982460)
chr7 (26-135)||(47412949-47413058)
chr7 (235-287)||(22609901-22609953)
chr7 (60-135)||(9158590-9158665)
chr7 (29-135)||(7579453-7579559)
chr7 (234-287)||(37961620-37961673)
chr7 (242-282)||(46205837-46205877)
chr7 (49-135)||(7570696-7570782)
chr7 (49-135)||(7577111-7577197)
chr7 (26-135)||(43439340-43439449)
chr7 (22-54)||(1507663-1507695)
chr7 (171-231)||(9963952-9964014)
chr7 (234-280)||(29772451-29772497)
chr7 (26-54)||(11486660-11486688)
chr7 (26-54)||(23657868-23657896)
[»] scaffold0006 (1 HSPs)
scaffold0006 (26-135)||(280341-280450)
[»] chr5 (14 HSPs)
chr5 (28-133)||(28867731-28867836)
chr5 (19-133)||(36896849-36896962)
chr5 (60-136)||(9514596-9514672)
chr5 (234-287)||(33699973-33700026)
chr5 (62-127)||(14149140-14149205)
chr5 (62-127)||(18014223-18014288)
chr5 (26-139)||(32715476-32715588)
chr5 (62-135)||(39057857-39057930)
chr5 (242-282)||(36193845-36193885)
chr5 (172-235)||(18014332-18014397)
chr5 (22-54)||(33106044-33106076)
chr5 (191-235)||(36896745-36896789)
chr5 (65-136)||(26637428-26637499)
chr5 (22-54)||(32716109-32716141)
[»] chr4 (18 HSPs)
chr4 (27-136)||(34293397-34293506)
chr4 (26-136)||(7017247-7017357)
chr4 (27-139)||(34041771-34041882)
chr4 (22-135)||(53732289-53732402)
chr4 (62-127)||(23996259-23996324)
chr4 (60-135)||(1687947-1688022)
chr4 (29-78)||(8434430-8434479)
chr4 (71-136)||(46798843-46798908)
chr4 (237-281)||(42989750-42989794)
chr4 (171-235)||(34041913-34041979)
chr4 (171-231)||(34293303-34293365)
chr4 (236-282)||(16182244-16182290)
chr4 (26-80)||(23777411-23777465)
chr4 (235-282)||(40262463-40262510)
chr4 (242-280)||(2933663-2933701)
chr4 (22-56)||(51964943-51964977)
chr4 (235-287)||(4641600-4641652)
chr4 (242-286)||(12842381-12842425)
[»] scaffold1532 (1 HSPs)
scaffold1532 (26-135)||(1316-1425)
[»] chr6 (9 HSPs)
chr6 (66-136)||(18053404-18053474)
chr6 (234-287)||(34576146-34576199)
chr6 (26-74)||(18052907-18052955)
chr6 (171-231)||(18053509-18053571)
chr6 (235-282)||(9961145-9961192)
chr6 (171-235)||(13865879-13865945)
chr6 (235-282)||(33029729-33029776)
chr6 (60-93)||(33483404-33483437)
chr6 (26-54)||(18053705-18053733)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-135)||(452668-452777)
[»] scaffold0778 (1 HSPs)
scaffold0778 (26-136)||(3541-3651)
[»] scaffold0096 (1 HSPs)
scaffold0096 (26-66)||(41609-41649)
[»] scaffold0227 (1 HSPs)
scaffold0227 (234-280)||(5041-5087)
[»] scaffold0193 (1 HSPs)
scaffold0193 (26-116)||(23090-23180)
[»] scaffold0063 (1 HSPs)
scaffold0063 (235-280)||(35760-35805)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 1566121 - 1566011
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1566121 ctaaaaacactaaggtgcaagttagcaagctgcacccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaaggacaat 1566022  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  1566021 tttgtaactag 1566011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 13474652 - 13474762
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  13474652 ctaaaaacactaaggtgcaagttagcaagttgcacccacttataatttactagaacacccttttgtttatattctaattaattttaaatagaagggcaat 13474751  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  13474752 tttgtaactag 13474762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 4203427 - 4203317
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||    
T  4203427 ctaaaaacactaaggtgcaagttagcaagttgcacccatttataatttactaaaacacctttttgtttatattttaattaattttaaatagaatgacaat 4203328  T
Q  126 tttgtaactag 136  Q
    ||||| |||||    
T  4203327 tttgtgactag 4203317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 19238320 - 19238422
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  19238320 ctaaaaacattaaggtgcaagttagcaagctgcacccacttataatttactaaaacaccattttgtttatattctaattaatttttaatagaagggtaat 19238419  T
Q  126 ttt 128  Q
    |||    
T  19238420 ttt 19238422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 19311504 - 19311606
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  19311504 ctaaaaacattaaggtgcaagttagcaagctgcacccacttataatttactaaaacaccattttgtttatattctaattaatttttaatagaagggtaat 19311603  T
Q  126 ttt 128  Q
    |||    
T  19311604 ttt 19311606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 9479318 - 9479232
Alignment:
Q  50 gcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9479318 gcaagctgcacccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 9479232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 38776607 - 38776498
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||| |||||| |||    
T  38776607 ctaaaaatactaaggtgcaagttagcaagctgtacccacttataatttactaaaacactcttt-gtttatattctaattaattttaaattgaagggtaat 38776509  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  38776508 tttgtaactag 38776498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 1554346 - 1554281
Alignment:
Q  43 caagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaatt 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1554346 caagttagcaagttgcacccacttataatttactaaaacaccattttatttatattctaattaatt 1554281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 3469002 - 3469067
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  3469002 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggcaattt 3469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 10335362 - 10335413
Alignment:
Q  236 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10335362 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacactctttg 10335413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 42443028 - 42443103
Alignment:
Q  19 acaccatctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgttta 94  Q
    ||||| |||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| |||||||||||||    
T  42443028 acaccctctaaaaacattaaggtgcaagttagcaagctgcatccatttataatttactaaaataccattttgttta 42443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 34347700 - 34347614
Alignment:
Q  47 ttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaac 133  Q
    |||||||| | | |||||||||| |||| |||||||||||||||||| |||||||||||| ||||| ||||| | ||||||||||||    
T  34347700 ttagcaagctacacccacttatattttattaaaacaccattttgtttctattctaattaaatttaattagaatgacaattttgtaac 34347614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 42907118 - 42907053
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||    
T  42907118 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaattgaagggcaattt 42907053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 39823498 - 39823450
Alignment:
Q  239 ttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39823498 ttgtgttacatgtacaaccaaaattgaacaactaatgcaacaccctttg 39823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 8625190 - 8625125
Alignment:
Q  76 taaaacaccattttgtttatattctaatt------aattttaaatagaagggcaattttgtaacta 135  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||    
T  8625190 taaaacaccattttgtttatattctaattctaattaattttaaatagaagggcaattttgtaacta 8625125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 44374415 - 44374485
Alignment:
Q  66 tataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  44374415 tataatttactaaaatactcttttttttatattctaattaattttaaatagaaatacaattttgtaactag 44374485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 43899154 - 43899110
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaacacccttt 286  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  43899154 tgttatttgtacaaccaaaattgaacaactaatgcaacacccttt 43899110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 15540602 - 15540552
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaatttt 110  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  15540602 cccacttgtaatttactaaaacaccattttatttacattctaattaatttt 15540552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 28321009 - 28321062
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    ||||||||||||||||||||||  ||||||| |||||| |||||||| ||||||    
T  28321009 aagagttgtgttatatgtacaattaaaattggacaacttatgcaacaacctttg 28321062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 1565976 - 1565914
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||| ||| |||||||    
T  1565976 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaaggaaacaatattt 1565914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 8625089 - 8625027
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||| ||| |||||||    
T  8625089 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaaggaaacaatattt 8625027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 11796713 - 11796670
Alignment:
Q  237 agttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||    
T  11796713 agttgtgttatttgtacaaccaaaattgtacaacttatgcaaca 11796670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 44374520 - 44374582
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||  |||||||  |||||||||||||| | ||||||||||| |||||||||||    
T  44374520 gacaatgacatgtttaaggtacaaaacatgtaataaagacaaacttttaaggaaataatattt 44374582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 9478973 - 9479001
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  9478973 ctaaaaacactaaggtgcaagttagcaag 9479001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 40304649 - 40304621
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  40304649 ctaaaaacactaaggtgcaagttagcaag 40304621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 42443289 - 42443321
Alignment:
Q  86 ttttgtttatattctaattaattttaaatagaa 118  Q
    |||||||||||||||||||||||| ||||||||    
T  42443289 ttttgtttatattctaattaatttcaaatagaa 42443321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 42807925 - 42807893
Alignment:
Q  24 atctaaaaacactaaggtgcaagttagcaagtt 56  Q
    ||||||||| |||||||||||||||||||||||    
T  42807925 atctaaaaatactaaggtgcaagttagcaagtt 42807893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 6475451 - 6475341
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  6475451 ctaaaaacactaaggtgcaagttagtaagctgcacccacttataatttactaaaacactcttttgtttatattctaattaattttaaatagaagggcaat 6475352  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  6475351 tttgtaactag 6475341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 6746489 - 6746599
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  6746489 ctaaaaacactaaggtgcaagttagcaagctgcacccacttataatttactaaaacactcttttgtttatattctagttaattttaaatagaagggcaat 6746588  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  6746589 tttgtaactag 6746599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 6515577 - 6515467
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  6515577 ctaaaaacattaaggtgcaagttagcaagctgcacccacttataatttactaaaacacccttttgtttgtattctaattaattttaaatagaagggcaat 6515478  T
Q  126 tttgtaactag 136  Q
    |||| ||||||    
T  6515477 tttgcaactag 6515467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 45714092 - 45713979
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  45714092 ctaaaaacactaaggtgcaagttagcaagctgcattcacttataatttactaaaacacccttttgtttatattctaattaatttttaatagaaggacaat 45713993  T
Q  126 tttgtaactagttt 139  Q
    ||||||||||||||    
T  45713992 tttgtaactagttt 45713979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 8814691 - 8814584
Alignment:
Q  29 aaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatttt 128  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8814691 aaaacactaaggtgtaagttagcaagctgcacccacttataatttaccaaaacaccattttgtttatattctaattaattttaaatagaatgacaatttt 8814592  T
Q  129 gtaactag 136  Q
    ||||||||    
T  8814591 gtaactag 8814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 44682502 - 44682393
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||    
T  44682502 ctaaaaacacta-ggtgcaagttagcaagctgcacccacttataatttactaaaacacacttttgtttatattctaattaattttaaatagaagaacaat 44682404  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  44682403 tttgtaactag 44682393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 22896798 - 22896690
Alignment:
Q  28 aaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    ||||||||||||||||||||||||||||| |  ||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||| | |||    
T  22896798 aaaaacactaaggtgcaagttagcaagttacatccacttatattttattaaaatacccttttgtttatattctaattaattttaaatagaagggtagttt 22896699  T
Q  128 tgtaactag 136  Q
    |||||||||    
T  22896698 tgtaactag 22896690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 27077846 - 27077954
Alignment:
Q  28 aaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||||||  | ||||||| |||| ||| || ||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  27077846 aaaaacactaaaatacaagttatcaagctgcacctacttattgtttactacaacacccttttgtttatattctaattaattttaaatagaaaggcaattt 27077945  T
Q  128 tgtaactag 136  Q
    |||||||||    
T  27077946 tgtaactag 27077954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 27083643 - 27083751
Alignment:
Q  28 aaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||||||  | ||||||| |||| ||| || ||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  27083643 aaaaacactaaaatacaagttatcaagctgcacctacttattgtttactacaacacccttttgtttatattctaattaattttaaatagaaaggcaattt 27083742  T
Q  128 tgtaactag 136  Q
    |||||||||    
T  27083743 tgtaactag 27083751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 54383662 - 54383715
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54383662 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcctttg 54383715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 30991914 - 30991849
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||    
T  30991914 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatataagggcaattt 30991849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 41409797 - 41409845
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41409797 aagagttgtgttatatgtacaatcaaaattgaacaactaatgcaacacc 41409845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 31152912 - 31152971
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacacca 85  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||    
T  31152912 ctaaaaacactaaggtgcaagttagcaagttgcacccacttgtattttactaaaaaacca 31152971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 25891683 - 25891573
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||| || |||||||||||||| |||  | | |||| ||||| || |||||||| ||||||| |||||||||||||||||||||||| ||| | || |    
T  25891683 ctaaaatcattaaggtgcaagttaacaatctacacccatttatatttgactaaaactccattttatttatattctaattaattttaaattgaatgacact 25891584  T
Q  126 tttgtaactag 136  Q
    ||||| |||||    
T  25891583 tttgttactag 25891573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 27065580 - 27065476
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||| || |||||||| | | |||||||||| ||||||||     | |||||||| |||||||||||| |||||||| |||| ||||    
T  27065580 ctaaaaacagtaaggtgtaaattagcaagctacacccacttatattttactaa-----ccttttgtttctattctaattaaatttaaataaaaggacaat 27065486  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  27065485 tttgtaacta 27065476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 42370823 - 42370864
Alignment:
Q  95 tattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42370823 tattctaattaattttaaatagaagggcaattttgtaactag 42370864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 48117038 - 48117094
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaaca 82  Q
    ||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  48117038 ctaaaaatattaaggtgtaagttagcaagttgcacccacttataatttactaaaaca 48117094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 31153766 - 31153660
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||| | | ||||||| || |||||| ||||||| ||| || | ||||   ||| ||||||||| |||||  |||    
T  31153766 ctaaaaacactaaggtgcaagttagcaagctacacccacttgtattttactgaaacaccctttagtctctattaatatttattttaaatggaaggataat 31153667  T
Q  126 tttgtaa 132  Q
    |||||||    
T  31153666 tttgtaa 31153660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 46970664 - 46970759
Alignment:
Q  35 ctaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaa 132  Q
    |||||||||||||||||||| | | ||||||| || |||||||||||||| |||||  | ||||| ||||||||||||||  ||||||| ||| ||||    
T  46970664 ctaaggtgcaagttagcaagctacacccacttgtattttactaaaacacccttttg--tctattcaaattaattttaaattaaagggcagtttagtaa 46970759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 38360172 - 38360223
Alignment:
Q  236 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| ||||||    
T  38360172 gagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttg 38360223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 30991806 - 30991741
Alignment:
Q  172 acaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    |||||||||||| |||||||  |||||||||||| | | ||||||||||| |||||||||||||||    
T  30991806 acaatgacatgcttaaggtataaaacatgtaatagagacaaacttttaaggaaataatatttagaa 30991741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 8914001 - 8913957
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaacacccttt 286  Q
    |||||| ||||||| |||||||||||||||||||||||| |||||    
T  8914001 tgttatttgtacaatcaaaattgaacaactaatgcaacaaccttt 8913957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 6515432 - 6515370
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||| ||  |||||||||||||| | ||||||||||| |||||||||||    
T  6515432 gacaatgacatgcttaagatacaaaacatgtaataaagacaaacttttaaggaaataatattt 6515370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 14986083 - 14986053
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagtt 56  Q
    |||||||||||||||||||||||||||||||    
T  14986083 ctaaaaacactaaggtgcaagttagcaagtt 14986053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 49080714 - 49080751
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattc 99  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  49080714 cacttatattttactaaaacaccattttgtttctattc 49080751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 45713723 - 45713751
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  45713723 ctaaaaacactaaggtgcaagttagcaag 45713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 31659668 - 31659558
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  31659668 ctaaaaatactaaggtgcaagttagcaagctgcacccacttataatttactaaaacacccttttgtttatattctaattaaatttaaatagaagggcaat 31659569  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  31659568 tttgtaactag 31659558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 3670565 - 3670673
Alignment:
Q  27 taaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatt 126  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  3670565 taaaaacactaaggtgcaagttagcaagttgcatccacttataatttactaaaacacccttttgtttatattctaattaattttaaatagaagggcaa-t 3670663  T
Q  127 ttgtaactag 136  Q
    ||||||||||    
T  3670664 ttgtaactag 3670673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 13829781 - 13829677
Alignment:
Q  32 acactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgta 131  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13829781 acactaaggtgcaagttagcaagctgcacccacttataatttgctaaaacacccttttgtttatattctaattaattttaaatagaagggcaattttgta 13829682  T
Q  132 actag 136  Q
    |||||    
T  13829681 actag 13829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 6831386 - 6831479
Alignment:
Q  43 caagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6831386 caagttagcaagctgcacccacttataatttactaaaacacccttttgtttatattctaattaattttaaatagaagggcaattttgtaactag 6831479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 10862756 - 10862865
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| || |||||||| | | |||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||| |    
T  10862756 ctaaaaacactaaggtgtaaattagcaagctacacccacttatattttactaaaacacccttttgtttctattctaattaaatttaaatagaagggcagt 10862855  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  10862856 tttgtaacta 10862865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 14799029 - 14798945
Alignment:
Q  51 caagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||| | |||||| ||| |||||||||||| |||||| ||| |||||||||||| |||||||||||||||| |||||||||||    
T  14799029 caagttacacccactcatattttactaaaacatcattttatttctattctaattaaatttaaatagaagggcagttttgtaacta 14798945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 36911493 - 36911431
Alignment:
Q  73 tactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||||| | |||||||| |||||||||||| |||||||| || |||| |||||||||||    
T  36911493 tactaaaacatctttttgtttctattctaattaaatttaaataaaatggcagttttgtaacta 36911431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 3677479 - 3677532
Alignment:
Q  27 taaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaa 80  Q
    |||||||||||||||||||||||||||| | | || ||||||| ||||||||||    
T  3677479 taaaaacactaaggtgcaagttagcaagctacacctacttatattttactaaaa 3677532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 39443444 - 39443487
Alignment:
Q  93 tatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  39443444 tatattctagttaattttaaatagaatgtcaattttgtaactag 39443487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 29513267 - 29513362
Alignment:
Q  26 ctaaaaacactaa---ggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaa 118  Q
    |||||||||||||   |||||||||||||||| ||| || |||  | |||||| | |||||| |||||| |||| || ||||||||||||| ||||    
T  29513267 ctaaaaacactaaagtggtgcaagttagcaagctgcacctactagttatttaccataacacccttttgtctatactcaaattaattttaaaaagaa 29513362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 29404174 - 29404258
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaa 113  Q
    |||||||||||||| |||||||||||||| | | ||||||| || |||||||| ||||| |||  | | ||||| |||||||||||||    
T  29404174 ctaaaaacactaag-tgcaagttagcaagctacacccacttgtattttactaacacacccttt--tatctattcaaattaattttaaa 29404258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 508446 - 508556
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  508446 ctaaaaacactaaggtgcaagttagcaagctgcaccgacttataatttactaaaacactcttttgtttatattctaattaattttaaatagaagggcaat 508545  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  508546 tttgtaactag 508556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 13413805 - 13413914
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  13413805 ctaaaaacattaaggtgcaagttagcaagctgcaaccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaatggcagt 13413904  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  13413905 tttgtaacta 13413914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 37553451 - 37553341
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  37553451 ctaaaaatactaaggtgcaagttagcaagctgcaccgacttataatttactaaaacactcttttgtttatattctaattaattttaaatagaagggaaat 37553352  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  37553351 tttgtaactag 37553341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 49901648 - 49901542
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| | ||||    
T  49901648 ctaaaaacactaaggtgcaagtaagcaagctgcacccacttataatttactaaaagacccttttatttatattctaattaattttaaatagaatgacaat 49901549  T
Q  126 tttgtaa 132  Q
    |||||||    
T  49901548 tttgtaa 49901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 30694634 - 30694539
Alignment:
Q  41 tgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    |||||||||||||| ||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||| |||| || ||||||||||||    
T  30694634 tgcaagttagcaagctgcacccacttataatttattaatacacccttttgtttatattataattaattttaaataaaaggacagttttgtaactag 30694539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 27055986 - 27055921
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  27055986 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggcaattt 27055921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 46435205 - 46435270
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  46435205 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggcaattt 46435270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 6797567 - 6797516
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacccttt 286  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6797567 agagttgtgttatatgtacaactaaaattgaacaactaatgcaacacccttt 6797516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 52594849 - 52594924
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||||| |||| |||||||||||||| ||| |||||||||||| |||||| |||||| ||||||||||||||    
T  52594849 cccacttatattttattaaaacaccattttatttttattctaattaaatttaaacagaaggacaattttgtaacta 52594924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 1141618 - 1141568
Alignment:
Q  236 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacccttt 286  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1141618 gagttgtgttatatgtacaaccaaaattgaataactaatgcaacacccttt 1141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 29119091 - 29119156
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||    
T  29119091 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggaaattt 29119156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 35760243 - 35760308
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| ||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||    
T  35760243 cacttatattttactaaaacgcctttttgtttctattctaattaaatttaaatagaagggcaattt 35760308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 36018275 - 36018167
Alignment:
Q  27 taaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatt 126  Q
    |||||||||||| ||| || ||| |||  | | |||||||||| ||||||||||||||||||| ||| |||| ||||||| ||||||||||| | || ||    
T  36018275 taaaaacactaacgtgtaaattaacaaactacacccacttatattttactaaaacaccattttatttctattttaattaaatttaaatagaatgacagtt 36018176  T
Q  127 ttgtaacta 135  Q
    |||||||||    
T  36018175 ttgtaacta 36018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 50797990 - 50798041
Alignment:
Q  236 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  50797990 gagttgtgttatatgtacaaccaaaattgaacgacaaatgcaacaccctttg 50798041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 46832709 - 46832782
Alignment:
Q  63 acttataatttactaaaacaccattttgtttatattctaatt-aattttaaatagaagggcaattttgtaacta 135  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||  ||| |||||||||||    
T  46832709 acttatattttactaaaacaccattttgtttctattctaattaaatttaaaatagaaatgcagttttgtaacta 46832782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 47030427 - 47030472
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  47030427 agagttgttttatatgtacaaccaaaattgaacaactaatgcaaca 47030472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 37553117 - 37553148
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaa 53  Q
    ||||||||||||||||||||||||||||||||    
T  37553117 ccatctaaaaacactaaggtgcaagttagcaa 37553148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 35760352 - 35760417
Alignment:
Q  172 acaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    |||||||||||| |||||||  |||||||||||| | | ||||||||||| ||| |||||||||||    
T  35760352 acaatgacatgcttaaggtataaaacatgtaatacagacaaacttttaaggaaacaatatttagaa 35760417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 46435314 - 46435379
Alignment:
Q  172 acaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    ||||||||||| ||||||||  |||||||||||| | | ||||||||||| ||| |||||||||||    
T  46435314 acaatgacatgtctaaggtataaaacatgtaatagagacaaacttttaaggaaacaatatttagaa 46435379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 24657144 - 24657088
Alignment:
Q  29 aaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacacca 85  Q
    ||||||||||| ||||||||||||||   | |||||||||| |||||||||| ||||    
T  24657144 aaaacactaagatgcaagttagcaagccacacccacttatattttactaaaaaacca 24657088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 32151811 - 32151783
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  32151811 ctaaaaacactaaggtgcaagttagcaag 32151783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 52853930 - 52853902
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  52853930 ctaaaaacactaaggtgcaagttagcaag 52853902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 1507384 - 1507494
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  1507384 ctaaaaacgctaaggtgcaagttagcaagctgcacccacttgtaatttactaaaacacccttttgtttatattctaattaattttaaatagaagggaaat 1507483  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  1507484 tttgtaactag 1507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 24790818 - 24790927
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| ||||||||||| |||  |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||    
T  24790818 ctaaaaacactaaggtgtaagttagcaagctgcatccacttttaatttactaaaacatccttttgtttatattctaattaattttaaatagaagggtaat 24790917  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  24790918 tttgtaacta 24790927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 2658317 - 2658426
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| || |||||||| | | |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  2658317 ctaaaaacactaaggtgtaaattagcaagctacacccacttatattttactaaaacaccattttgtttctattctaattaaatttaaatagaaggacaat 2658416  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  2658417 tttgtaacta 2658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 9963812 - 9963918
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||    
T  9963812 ctaaaaacactaaggtgcaagtcagcaagctgcacctacttataatttactaaaacacccttttgtttatattctaattaattttaaat----gggcaat 9963907  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  9963908 tttgtaactag 9963918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 23102873 - 23102797
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23102873 cccacttatgattttctaaaacatcattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 23102797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 33473847 - 33473738
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| || |||||||||| | |||||||||| |||||||||||||| |||  ||| |||||||||||| |||||||||||| ||| |    
T  33473847 ctaaaaacactaaggtgtaaattagcaagttacacccacttatattttactaaaacaccttttcatttctattctaattaaatttaaatagaagagcagt 33473748  T
Q  126 tttgtaacta 135  Q
    ||| ||||||    
T  33473747 tttataacta 33473738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 10982350 - 10982460
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||||||||||||||| |||| ||| || |||  |  |||||||||| ||| ||||| |||||||||||||||||||||||||||| ||| |    
T  10982350 ctaaaaacactaaggtgcaagttaacaagctgcacctactagttctttactaaaatacccttttgattatattctaattaattttaaatagaagagcact 10982449  T
Q  126 tttgtaactag 136  Q
    || ||||||||    
T  10982450 ttcgtaactag 10982460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 47412949 - 47413058
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||||||||||||||| |||| ||| || |||  | |||||| |||||||| |||||| ||||||| ||||||||||||| ||||||| |      
T  47412949 ctaaaaacactaaggtgcaagttaacaagctgcacctactagttatttaccaaaacacccttttgtctatattcaaattaattttaaaaagaagggtagc 47413048  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  47413049 tttgtaacta 47413058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 22609953 - 22609901
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22609953 agagttgtattatatgtacaaccaaaattgaacaactaatgcaacaccctttg 22609901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 9158590 - 9158665
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||||| ||||||||||||||||||| ||| |||||| ||||| ||| ||||||| | ||||||||||||||    
T  9158590 cccacttatattttactaaaacaccattttctttctattctgattaaattttaatagaatgacaattttgtaacta 9158665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 7579453 - 7579559
Alignment:
Q  29 aaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatttt 128  Q
    |||||||||||||||||||||||||| | | | ||||| || |||| |||||||||| |||||   ||||| ||||||||| |||| |||||||| |||     
T  7579453 aaaacactaaggtgcaagttagcaagctacactcacttgtattttagtaaaacaccactttgtccctattcaaattaatttaaaattgaagggcagttta 7579552  T
Q  129 gtaacta 135  Q
    |||||||    
T  7579553 gtaacta 7579559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 37961673 - 37961620
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||| ||||||    
T  37961673 aagagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttg 37961620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 46205837 - 46205877
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  46205837 tgttatatgtacaaccaaaattggacaactaatgcaacacc 46205877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 7570696 - 7570782
Alignment:
Q  49 agcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||| | ||||||| || ||||||||||||||| |||||   ||||| ||||||||| |||| |||||||| ||| |||||||    
T  7570696 agcaagttacacccacttgtattttactaaaacaccactttgtccctattcaaattaatttaaaattgaagggcagtttagtaacta 7570782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 7577111 - 7577197
Alignment:
Q  49 agcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||| | ||||||| || ||||||||||||||| |||||   ||||| ||||||||| |||| |||||||| ||| |||||||    
T  7577111 agcaagttacacccacttgtattttactaaaacaccactttgtccctattcaaattaatttaaaattgaagggcagtttagtaacta 7577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 43439340 - 43439449
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| || |||||||| | |  | |||| || | ||||||| || |||||||| | ||||  |||| ||||||||||||||| || |    
T  43439340 ctaaaaacactaaggtgtaaattagcaagctacatctacttgtattctactaaatcatcattttgtctttattaaaatttattttaaatagaaggacagt 43439439  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  43439440 tttgtaacta 43439449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 1507695 - 1507663
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||||||    
T  1507695 ccatctaaaaacactaaggtgcaagttagcaag 1507663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 9963952 - 9964014
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||| ||| |||||||    
T  9963952 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaagcaaacaatattt 9964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 29772497 - 29772451
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    ||||||| |||||||||||||| || |||||||||||| ||||||||    
T  29772497 aagagttatgttatatgtacaatcagaattgaacaacttatgcaaca 29772451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 11486688 - 11486660
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  11486688 ctaaaaacactaaggtgcaagttagcaag 11486660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 23657896 - 23657868
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  23657896 ctaaaaacactaaggtgcaagttagcaag 23657868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 280341 - 280450
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  280341 ctaaaaacattaaggtgcaagttagcaagctgcatccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaatggcagt 280440  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  280441 tttgtaacta 280450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 28867731 - 28867836
Alignment:
Q  28 aaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  28867731 aaaaacactaaggtgcaagttagcaagatgcactcacttataatttactaaaacacatttttgtttatattctaattaattttaaatagaagggcaattt 28867830  T
Q  128 tgtaac 133  Q
     |||||    
T  28867831 cgtaac 28867836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 36896962 - 36896849
Alignment:
Q  19 acaccatctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaa 118  Q
    |||||| ||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  36896962 acaccacctaaaaaca-taatttgcaagttagcaagctgctcccacttataatttactaaaacacccttttgtttatattctaattaatttaaaatagaa 36896864  T
Q  119 gggcaattttgtaac 133  Q
    | |||||||||||||    
T  36896863 gtgcaattttgtaac 36896849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 9514596 - 9514672
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9514596 cccacttataatttactaaaacacccttttgtttatattctaattaattttaaatagaaggacaattttgtaactag 9514672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 33699973 - 33700026
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33699973 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 33700026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 14149205 - 14149140
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  14149205 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggcaattt 14149140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 18014223 - 18014288
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||    
T  18014223 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggtaattt 18014288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 32715476 - 32715588
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||| |||||||| |||||| | | || |||| || |||||||||||||| ||| || |   ||  |||||||| ||||||||||||||||    
T  32715476 ctaaaaacactaatgtgcaagtgagcaagctacacctacttgtattttactaaaacacccttt-gtctcggttaaaattaattctaaatagaagggcaat 32715574  T
Q  126 tttgtaactagttt 139  Q
    ||||||||||||||    
T  32715575 tttgtaactagttt 32715588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 39057857 - 39057930
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    |||||||| |||||||||||||| ||||||||  ||| ||||||| |||||||||||||||| ||| |||||||    
T  39057857 cacttatattttactaaaacacccttttgtttcaattttaattaaatttaaatagaagggcagtttcgtaacta 39057930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 36193885 - 36193845
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  36193885 tgttatatgtacaatcaaaattgaacaactaatgcaacacc 36193845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 18014332 - 18014397
Alignment:
Q  172 acaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    |||||||||||| |||| ||  |||||||||||| | ||||||||||||| |||||||||||||||    
T  18014332 acaatgacatgcttaagatataaaacatgtaatagagataaacttttaaggaaataatatttagaa 18014397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 33106076 - 33106044
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||||||    
T  33106076 ccatctaaaaacactaaggtgcaagttagcaag 33106044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 36896789 - 36896745
Alignment:
Q  191 aaaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||    
T  36896789 aaaacatgtaataaagacaaacttttaagaaaacaatatttagaa 36896745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 26637428 - 26637499
Alignment:
Q  65 ttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||| |||| ||||||||  |||||||| ||| |||||||||||| ||||| |||||| ||||||| ||||    
T  26637428 ttatattttattaaaacactcttttgtttctatactaattaatttttaatagtagggcagttttgtatctag 26637499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 32716141 - 32716109
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||| ||||||||||||||    
T  32716141 ccatctaaaaacactaagctgcaagttagcaag 32716109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 34293506 - 34293397
Alignment:
Q  27 taaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatt 126  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  34293506 taaaaacactgaggtgtaagttagcaagctgcacccacttataatttactaaaacacccttttgtttatattataattaattttaaatagaagggtaatt 34293407  T
Q  127 ttgtaactag 136  Q
    ||||||||||    
T  34293406 ttgtaactag 34293397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 7017357 - 7017247
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    |||||||||||||||||||||| |  |||  |  || |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  7017357 ctaaaaacactaaggtgcaagtaattaagccgaacctacttataattgactaaaacacccttttgtttatattctaattaattttaagtagaagggcaat 7017258  T
Q  126 tttgtaactag 136  Q
    |||||||||||    
T  7017257 tttgtaactag 7017247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 34041771 - 34041882
Alignment:
Q  27 taaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaatt 126  Q
    |||||||| ||||||||||||||||||| ||| ||||| | ||||||||||||||||  |||||||||||||||||| ||||||||||  |||| |||||    
T  34041771 taaaaacattaaggtgcaagttagcaagctgcacccacgtgtaatttactaaaacact-ttttgtttatattctaatcaattttaaatgaaaggacaatt 34041869  T
Q  127 ttgtaactagttt 139  Q
    |||||||||||||    
T  34041870 ttgtaactagttt 34041882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 53732402 - 53732289
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaaggg 121  Q
    |||||||||||||| |||||| || |||| ||| |   |||||||||| |||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  53732402 ccatctaaaaacacgaaggtgtaaattagaaagctatacccacttatattttactaaaacatccttttgtttctattctaattaaatttaaatagaaggg 53732303  T
Q  122 caattttgtaacta 135  Q
     | |||||||||||    
T  53732302 tagttttgtaacta 53732289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 23996259 - 23996324
Alignment:
Q  62 cacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattt 127  Q
    |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  23996259 cacttatattttactaaaacacctttttgtttctattctaattaaatttaaatagaagggcaattt 23996324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 1687947 - 1688022
Alignment:
Q  60 cccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaacta 135  Q
    ||||||| || ||||| |||||||| |||||||| |||||||||||| ||||||||||| | || |||||||||||    
T  1687947 cccacttgtattttacgaaaacacccttttgtttctattctaattaaatttaaatagaatgacatttttgtaacta 1688022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 8434430 - 8434479
Alignment:
Q  29 aaaacactaaggtgcaagttagcaagttgctcccacttataatttactaa 78  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  8434430 aaaacactaaggtgcaagttagcaaactgcacccacttataatttactaa 8434479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 46798908 - 46798843
Alignment:
Q  71 tttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    |||||||||||||  ||||| ||||||| |||||||| |||||||||| |||| ||||||||||||    
T  46798908 tttactaaaacactcttttgattatattttaattaatattaaatagaatggcacttttgtaactag 46798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 42989750 - 42989794
Alignment:
Q  237 agttgtgttatatgtacaaccaaaattgaacaactaatgcaacac 281  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  42989750 agttgtattatttgtacaaccaaaattgaacaactaatgcaacac 42989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 34041913 - 34041979
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||| ||| |||||||||||    
T  34041913 gacaatgacatgcttaaggtacgaaacatgtaataaagacaaacttttaaggaaacaatatttagaa 34041979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 34293365 - 34293303
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||||||| |||||||    
T  34293365 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaagaaaacaatattt 34293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 16182244 - 16182290
Alignment:
Q  236 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||    
T  16182244 gagttgtgttattcgtacaaccaaaattggacaactaatgcaacacc 16182290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 23777465 - 23777411
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaa 80  Q
    ||||||||||||||||||||||||||||| ||| ||||||| |  ||||||||||    
T  23777465 ctaaaaacactaaggtgcaagttagcaagctgcacccacttgtcttttactaaaa 23777411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 40262510 - 40262463
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    ||||||||||||| |||||| | ||||||| |||||||||||||||||    
T  40262510 agagttgtgttatttgtacatctaaaattggacaactaatgcaacacc 40262463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 2933701 - 2933663
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  2933701 tgttatttgtacaaccaaaattgaacaactaatgtaaca 2933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 51964977 - 51964943
Alignment:
Q  22 ccatctaaaaacactaaggtgcaagttagcaagtt 56  Q
    |||||||||||||||||| ||||||||||||||||    
T  51964977 ccatctaaaaacactaagatgcaagttagcaagtt 51964943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 4641600 - 4641652
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||||| ||||||||||||||||||| | || | |||||||| ||||||    
T  4641600 agagttgtgtaatatgtacaaccaaaattggataatttatgcaacaacctttg 4641652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 12842425 - 12842381
Alignment:
Q  242 tgttatatgtacaaccaaaattgaacaactaatgcaacacccttt 286  Q
    |||||| ||||||||||||||| |||||||||| ||||| |||||    
T  12842425 tgttatttgtacaaccaaaattcaacaactaatacaacaaccttt 12842381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 1316 - 1425
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  1316 ctaaaaacactaaggtgcaggttagcaagctgcacctacttataatttactaaaacactcttttatttatattctaattaattttaaataaaagggcaat 1415  T
Q  126 tttgtaacta 135  Q
    ||| ||||||    
T  1416 tttataacta 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 18053404 - 18053474
Alignment:
Q  66 tataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaattttgtaactag 136  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18053404 tataatttactaaaacactcatttgtttatattctaattaattttaaatagaagggcaattttgtaactag 18053474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 34576146 - 34576199
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttg 287  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  34576146 aagagttgtgttatatatacaatcaaaattgaacaactaatgcaacaccttttg 34576199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 18052907 - 18052955
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataattta 74  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  18052907 ctaaaaacactaaggtgcaagttagcaaactgcacccacttataattta 18052955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 18053509 - 18053571
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatattt 231  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||||||| |||||||    
T  18053509 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaagaaaacaatattt 18053571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 9961145 - 9961192
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    ||||||||||||| |||||||| |||||||||||| ||||| ||||||    
T  9961145 agagttgtgttatttgtacaactaaaattgaacaattaatgtaacacc 9961192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 13865945 - 13865879
Alignment:
Q  171 gacaatgacatgcctaaggta--aaacatgtaataaaaataaacttttaagaaaataatatttagaa 235  Q
    ||||||||||||| |||||||  |||||||||||||| | ||||||||||  ||| |||||||||||    
T  13865945 gacaatgacatgcttaaggtacaaaacatgtaataaagacaaacttttaatgaaacaatatttagaa 13865879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 33029776 - 33029729
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaacacc 282  Q
    ||||||||||||| | |||||||||||||| |||||||| ||||||||    
T  33029776 agagttgtgttatttatacaaccaaaattggacaactaacgcaacacc 33029729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 33483404 - 33483437
Alignment:
Q  60 cccacttataatttactaaaacaccattttgttt 93  Q
    |||||||||| |||||||||||||||||||||||    
T  33483404 cccacttatattttactaaaacaccattttgttt 33483437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 18053733 - 18053705
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaag 54  Q
    |||||||||||||||||||||||||||||    
T  18053733 ctaaaaacactaaggtgcaagttagcaag 18053705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 452668 - 452777
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||||||||||| ||  ||| ||| | | |||||||||| |||||||||||||| |||||||| |||| ||||||| |||||||||||||||| |    
T  452668 ctaaaaacactaaggtgtaaaatagtaagctacacccacttatattttactaaaacacctttttgtttctattttaattaaatttaaatagaagggcagt 452767  T
Q  126 tttgtaacta 135  Q
    ||||||||||    
T  452768 tttgtaacta 452777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 3651 - 3541
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatagaagggcaat 125  Q
    ||||||||| |||||| |||||| |||||   | |||| ||||| || |||||||| || |||||||||||||||||||||||||||||| || | || |    
T  3651 ctaaaaacattaaggtacaagtttgcaagcgacacccatttatatttgactaaaactcccttttgtttatattctaattaattttaaataaaatgacact 3552  T
Q  126 tttgtaactag 136  Q
    ||||| |||||    
T  3551 tttgttactag 3541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 41649 - 41609
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccactt 66  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  41649 ctaaaaacactaaggtgcaagttagcaagttgcacccactt 41609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 5041 - 5087
Alignment:
Q  234 aagagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    ||||||||||||||||||||||| ||||||| |||| | ||||||||    
T  5041 aagagttgtgttatatgtacaactaaaattggacaatttatgcaaca 5087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 23180 - 23090
Alignment:
Q  26 ctaaaaacactaaggtgcaagttagcaagttgctcccacttataatttactaaaacaccattttgtttatattctaattaattttaaatag 116  Q
    ||||||| | ||||||| || ||| |||||| | |||| ||||| |||| |||||||   |||||||| |||||||||||| |||||||||    
T  23180 ctaaaaatattaaggtgtaaattaacaagttacacccagttatattttattaaaacattcttttgtttctattctaattaaatttaaatag 23090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 35760 - 35805
Alignment:
Q  235 agagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 280  Q
    |||||||  ||||||||||||||||| |||||||||||||| ||||    
T  35760 agagttgaattatatgtacaaccaaatttgaacaactaatgtaaca 35805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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