View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_30 (Length: 286)
Name: NF2274_low_30
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 26841367 - 26841118
Alignment:
| Q |
1 |
tttggcttaggcgatgaccgtggttgaaggcaacatattgagatatagggatagactttgtgaatagagagaatgaatgatttgaatt-ttttattggaa |
99 |
Q |
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| T |
26841367 |
tttggcttaggcgatgacagtggttgaagacaacatattgagatatagggatagactttgtgaatagagagaaggaatgatttgaatttttttcttggaa |
26841268 |
T |
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| Q |
100 |
agtgaggaggatgggataatgcactttttcgaggatgagagatatcagtgttcacaacattggaaataaacacataagtggcgcattgaattccttgtgt |
199 |
Q |
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| T |
26841267 |
agtgaggaggatgagatagtgcacttttccgaggat--gagatatcagtcttcacaacattggaaataaacacataagtggcgctgcaaatttctagtgt |
26841170 |
T |
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| Q |
200 |
ataggaataggcatcaacagatgagttgattgtgagagggaaaataggaata |
251 |
Q |
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| T |
26841169 |
ataggaatacgcatcagcagatgagttgattgtgagagggaaaataggaata |
26841118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 22482421 - 22482535
Alignment:
| Q |
138 |
gagatatcagtgttcacaacattggaaataaacacataagtggcgcattgaattccttgtgtataggaataggcatcaacagatgagttgattgtgagag |
237 |
Q |
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| T |
22482421 |
gagatatcagtgttcacaacattggaaataaacacataagtggcgctttaaattccttttgtataggaatacgcatcagcagatgagttgattgtgagag |
22482520 |
T |
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| Q |
238 |
ggaaaataggaatag |
252 |
Q |
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| T |
22482521 |
ggaaaataggaatag |
22482535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 22482348 - 22482426
Alignment:
| Q |
39 |
tgagatatagggatagactttgtgaatagagagaatgaatgatttgaattttttattggaaagtgaggaggatgggata |
117 |
Q |
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| T |
22482348 |
tgagatatagggatagactttgtgaatagagagaaggaatgatttgaattttttcttggaaagtgaggaggatgagata |
22482426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22477037 - 22477078
Alignment:
| Q |
1 |
tttggcttaggcgatgaccgtggttgaaggcaacatattgag |
42 |
Q |
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| T |
22477037 |
tttggcttaggcgatgactgtggttgaagacaacatattgag |
22477078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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