View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_33 (Length: 280)
Name: NF2274_low_33
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 53175440 - 53175184
Alignment:
| Q |
18 |
tcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttac |
117 |
Q |
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| T |
53175440 |
tcattgtcctctgttttgcatgaaacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttac |
53175341 |
T |
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| Q |
118 |
caaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaagacca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53175340 |
caaacgtggtttaggggaaccagttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaaaacca |
53175241 |
T |
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| Q |
218 |
acttggaaatgtttctcttatgaagagttgtttgatgctaccaatggcttcatctca |
274 |
Q |
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| T |
53175240 |
acatggaaatgtttctcttatgaagagttgtttgatgctaccaatggcttcaactca |
53175184 |
T |
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