View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_35 (Length: 262)
Name: NF2274_low_35
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43555337 - 43555095
Alignment:
| Q |
1 |
agagttttttaatgcaattaagaataatgacatttccacattttcaagcataatgaaagaaagagaaggaattctcaaccagagaactagtgataccttc |
100 |
Q |
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| T |
43555337 |
agagttttttaatgcaattaagaataatgacatttccacattttcaagcatagtgaaagtaagagaaggaattctcaaccagagaactgatgataccttc |
43555238 |
T |
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| Q |
101 |
aacactccattacacctagcttccaagtatggttgcattgaaatggtgtctgagattgttagattatgccctgacttggtttctgctgagaatgaaaaca |
200 |
Q |
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| T |
43555237 |
aacactccattacacctagcttccaagtatggttgcattgaaatggtgtctgagattgttagattatgccctgacatggtttctgctgagaatgaaaaca |
43555138 |
T |
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| Q |
201 |
tggagactccaattcatgaggcttgcagacaagagaatgttaa |
243 |
Q |
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| T |
43555137 |
tggagactccaattcatgaggcttgcagacaagagaatgttaa |
43555095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43551021 - 43550782
Alignment:
| Q |
1 |
agagttttttaatgcaattaagaataatgacatttccacattttcaagcataatgaaagaaagagaaggaattctcaaccagagaactagtgataccttc |
100 |
Q |
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||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||| |
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| T |
43551021 |
agagtttttcgatgcaattaagaaaaatgacatgatcacattttcaagcatagtgaaagaaagagaaggaattcttaaccagaaaacagatgataccttc |
43550922 |
T |
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| Q |
101 |
aacactccattacacctagcttccaagtatggttgcattgaaatggtgtctgagattgttagattatgccctgacttggtttctgctgagaatgaaaaca |
200 |
Q |
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| T |
43550921 |
agcgctccattacaccttgcttccaagtatggttgcattgaaatggtgtctgagattgttaaattatgccctgacatggtttctgctgagaataaaaaca |
43550822 |
T |
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| Q |
201 |
tggagactccaattcatgaggcttgcagacaagagaatgt |
240 |
Q |
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| T |
43550821 |
tggagactccaattcatgaggcttgtagacaagagaatgt |
43550782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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