View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_36 (Length: 261)

Name: NF2274_low_36
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_36
NF2274_low_36
[»] chr6 (5 HSPs)
chr6 (59-246)||(14659779-14659966)
chr6 (14-71)||(27597386-27597443)
chr6 (19-71)||(33703827-33703879)
chr6 (18-71)||(12896551-12896604)
chr6 (197-248)||(14670309-14670360)
[»] chr1 (8 HSPs)
chr1 (14-71)||(24187803-24187860)
chr1 (14-71)||(34394739-34394796)
chr1 (14-71)||(27841499-27841556)
chr1 (12-71)||(22872788-22872847)
chr1 (14-71)||(32715467-32715524)
chr1 (18-71)||(8066715-8066768)
chr1 (14-71)||(51235107-51235164)
chr1 (13-70)||(791533-791590)
[»] chr2 (4 HSPs)
chr2 (12-71)||(41193354-41193413)
chr2 (19-71)||(31366603-31366655)
chr2 (14-71)||(2152947-2153004)
chr2 (14-71)||(12840798-12840855)
[»] chr5 (5 HSPs)
chr5 (14-71)||(3524252-3524309)
chr5 (12-71)||(26817152-26817211)
chr5 (14-71)||(42908462-42908519)
chr5 (12-71)||(31070497-31070556)
chr5 (14-71)||(28749095-28749152)
[»] chr4 (4 HSPs)
chr4 (19-71)||(38937077-38937129)
chr4 (20-68)||(6583940-6583988)
chr4 (20-71)||(35651976-35652027)
chr4 (12-65)||(46173211-46173264)
[»] chr8 (4 HSPs)
chr8 (12-71)||(14338387-14338446)
chr8 (12-70)||(33690381-33690439)
chr8 (14-71)||(10904462-10904519)
chr8 (14-71)||(34361794-34361851)
[»] scaffold0488 (1 HSPs)
scaffold0488 (14-71)||(6087-6144)
[»] chr3 (3 HSPs)
chr3 (12-71)||(10221794-10221853)
chr3 (13-71)||(44772758-44772816)
chr3 (14-71)||(25614320-25614377)
[»] chr7 (4 HSPs)
chr7 (18-71)||(33380918-33380971)
chr7 (15-71)||(28683128-28683184)
chr7 (29-69)||(32747062-32747102)
chr7 (19-67)||(38888275-38888323)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 59 - 246
Target Start/End: Original strand, 14659779 - 14659966
Alignment:
Q  59 gaaccgaaccgtttgaaccgaaccaagtctggagcaatggttggctccttggnnnnnnnaccaagctatgttttgctatttaagcgaagtcattactctt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||    
T  14659779 gaaccgaaccgtttgaaccgaaccaagtctggagcaatggttggctccttggtttttttaccaagctatgttttgctatttaagtgaagtcattactctt 14659878  T
Q  159 aacaaaccaatgatacacataaataaaaacaaaagctgattttcattgtgtaaccaacctgtaaaattgaataatgaggtgaagtata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659879 aacaaaccaatgatacacataaataaaaacaaaagctgattttcattgtgtaaccaacctgtaaaattgaataatgaggtgaagtata 14659966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27597443 - 27597386
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||    
T  27597443 gaaccgaactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 27597386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 33703879 - 33703827
Alignment:
Q  19 gaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||| ||||    
T  33703879 gaaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaatcgtt 33703827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 12896551 - 12896604
Alignment:
Q  18 cgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||  ||||||||| | ||||||||||| |||||||||||||||||||    
T  12896551 cgaaccgaataaaaaataaccgaaccattataattgttcatgaaccgaaccgtt 12896604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 14670309 - 14670360
Alignment:
Q  197 attttcattgtgtaaccaacctgtaaaattgaataatgaggtgaagtatatg 248  Q
    |||||||||||  ||| |||||||||||| | ||||||||||||||||||||    
T  14670309 attttcattgttaaactaacctgtaaaatggtataatgaggtgaagtatatg 14670360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 24187860 - 24187803
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24187860 gaaccgaaccgaaccaaaaataactgaaccattataatggttcatgaactgaaccgtt 24187803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 34394796 - 34394739
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  34394796 gaaccgaaccgaaccaaaaataaccgaaccattataatggttcatgaaccgaaccgtt 34394739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 27841499 - 27841556
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  27841499 gaaccgaaccgaaccaaaaataaccgaaccattataatggttcatgaaccaaaccgtt 27841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22872847 - 22872788
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||    
T  22872847 atgaaccgaaccgaacaaaaaataaccgaaccattataatggttcaagaaccgaaccgtt 22872788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 32715524 - 32715467
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||| | |||||||||||||||||  ||||||||||||    
T  32715524 gaaccgaaccgaaccaaaaataaccgaaccattataatggttcacaaaccgaaccgtt 32715467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 8066768 - 8066715
Alignment:
Q  18 cgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||||||||    
T  8066768 cgaaccgaactaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 8066715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 51235107 - 51235164
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||| |||| |||||||||| | |||||| |||||||||| |||||||||||||    
T  51235107 gaaccgaatcgaatcaaaaataaccgaaccattctaatggttcacgaaccgaaccgtt 51235164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 791590 - 791533
Alignment:
Q  13 tgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgt 70  Q
    ||||||||||| ||||| ||||||  | |||||||||| |||||| ||||||||||||    
T  791590 tgaaccgaaccaaaccataaataatcgaaccattataaaggttcacgaaccgaaccgt 791533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 41193354 - 41193413
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  41193354 atgaaccgaaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 41193413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31366655 - 31366603
Alignment:
Q  19 gaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  31366655 gaaccgaaccaaaaataaccgaaccattataatggttcatgaaccgaaccgtt 31366603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2152947 - 2153004
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  2152947 gaaccgaatcgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 2153004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 12840855 - 12840798
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||| ||||||||||||||| | |  |||||||||||||| |||||||||||||    
T  12840855 gaaccgaatcgaaccaaaaataaccgaattattataatggttcacgaaccgaaccgtt 12840798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 3524309 - 3524252
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  3524309 gaaccgaaccgaaccaaaaataaccgaatcattataatggttcatgaaccgaaccgtt 3524252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 26817152 - 26817211
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||| |||||||||||||    
T  26817152 atgaaccgaaccgaacaaaaaacaaccgaaccattataatggttcacgaaccgaaccgtt 26817211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 42908519 - 42908462
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||| |||||||||  | ||||||||||||||||| |||||||||||||    
T  42908519 gaaccgaaccgaatcaaaaataatcgaaccattataatggttcacgaaccgaaccgtt 42908462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 31070556 - 31070497
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||| |||||||||||||||||||| | | ||||||||||||||| |||||||| ||||    
T  31070556 atgaatcgaaccgaaccaaaaataaccgaatcattataatggttcacgaaccgaatcgtt 31070497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 28749152 - 28749095
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||| ||||||| |||||||||  | | ||||||||||||||| |||||||||||||    
T  28749152 gaaccaaaccgaatcaaaaataaaagaatcattataatggttcacgaaccgaaccgtt 28749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 38937129 - 38937077
Alignment:
Q  19 gaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  38937129 gaaccgaaccaaaaataactgaaccattataatggttcctgaaccgaaccgtt 38937077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 6583988 - 6583940
Alignment:
Q  20 aaccgaaccaaaaataactggaccattataatggttcatgaaccgaacc 68  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  6583988 aaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaacc 6583940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 35651976 - 35652027
Alignment:
Q  20 aaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||   || ||||||||||||||||||||||||||||    
T  35651976 aaccgaaccaaaaataaccaaactattataatggttcatgaaccgaaccgtt 35652027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 46173264 - 46173211
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccga 65  Q
    ||||||||||||||| ||||||||||   | ||||||||||||||| |||||||    
T  46173264 atgaaccgaaccgaatcaaaaataaccaaatcattataatggttcacgaaccga 46173211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 14338446 - 14338387
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||    
T  14338446 atgaaccgaaccgaaccaaaaataatcgaaccattataatggttcacgaaccgaaccgtt 14338387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 33690381 - 33690439
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgt 70  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||    
T  33690381 atgaaccgaaccaaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgt 33690439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 10904519 - 10904462
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  10904519 gaaccaaaccgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 10904462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 34361851 - 34361794
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||||||||||| | || |||||||||||||| |||| ||||||||    
T  34361851 gaaccgaaccgaaccaaaaataaccgaactattataatggttcacgaactgaaccgtt 34361794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 6087 - 6144
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||    
T  6087 gaaccgaactgaaccaaaaataaccgaaccattataatggttcacgaaccgaaccgtt 6144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 10221794 - 10221853
Alignment:
Q  12 atgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||| |||||||||||||    
T  10221794 atgaaccgaaccgaacaaaaaacaaccgaaccattataatggttcacgaaccgaaccgtt 10221853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 44772758 - 44772816
Alignment:
Q  13 tgaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||||    
T  44772758 tgaaccgaaccgaaccaaaaataaccgaatcattataatagttcacgaaccgaaccgtt 44772816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 25614320 - 25614377
Alignment:
Q  14 gaaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    |||||||| ||||||||| ||||  | ||||||||||||||||| |||||||||||||    
T  25614320 gaaccgaatcgaaccaaatataatcgaaccattataatggttcacgaaccgaaccgtt 25614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 33380918 - 33380971
Alignment:
Q  18 cgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  33380918 cgaaccgaaccaaaaataaccaaaccattataatggttcacgaaccgaaccgtt 33380971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 28683184 - 28683128
Alignment:
Q  15 aaccgaaccgaaccaaaaataactggaccattataatggttcatgaaccgaaccgtt 71  Q
    ||||||||||||||||||||||| | |||||| ||||||||||  ||||||||||||    
T  28683184 aaccgaaccgaaccaaaaataaccgaaccattttaatggttcacaaaccgaaccgtt 28683128  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 32747102 - 32747062
Alignment:
Q  29 aaaaataactggaccattataatggttcatgaaccgaaccg 69  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  32747102 aaaaataaccgaaccattataatggttcacgaaccgaaccg 32747062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 38888275 - 38888323
Alignment:
Q  19 gaaccgaaccaaaaataactggaccattataatggttcatgaaccgaac 67  Q
    |||| |||||||||||||| | ||||||||||||||| | |||||||||    
T  38888275 gaactgaaccaaaaataaccgaaccattataatggtttacgaaccgaac 38888323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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