View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2274_low_4 (Length: 579)
Name: NF2274_low_4
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Complemental strand, 42960467 - 42959918
Alignment:
| Q |
19 |
aacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960467 |
aacaatcccacctaaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatctta |
42960368 |
T |
|
| Q |
119 |
tcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcaccctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960367 |
tcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcaccctt |
42960268 |
T |
|
| Q |
219 |
acgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960267 |
acgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacaga |
42960168 |
T |
|
| Q |
319 |
acaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960167 |
acaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatc |
42960068 |
T |
|
| Q |
419 |
actatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42960067 |
actatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaa |
42959968 |
T |
|
| Q |
519 |
catttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959967 |
catttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 90 - 568
Target Start/End: Original strand, 5504339 - 5504817
Alignment:
| Q |
90 |
ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc |
189 |
Q |
| |
|
|||||||||| |||||||| || |||| || ||||||| | | | |||||| |||||| ||||| ||| ||||||| |||||| |||| || ||||| |
|
|
| T |
5504339 |
ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc |
5504438 |
T |
|
| Q |
190 |
tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaat |
289 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| | | ||||| |||||||| ||| | | || | ||||| ||||||||| | ||||||||||| |
|
|
| T |
5504439 |
tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaac |
5504538 |
T |
|
| Q |
290 |
ctcactttgtgtgaaaaacaaactacagaacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcac |
389 |
Q |
| |
|
||| || ||| ||| | |||| |||| |||||||||| | ||||||| ||| | ||||| | |||||||| |||| |||||| ||| || | |
|
|
| T |
5504539 |
tacacattatgtaaaagagaaaccgcagagagacttcttaaccttagtgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccc |
5504638 |
T |
|
| Q |
390 |
tagaacagttttgtagagacactgtgatcactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgt |
489 |
Q |
| |
|
|||| ||||| || | ||||||||| ||||| |||||||| || ||||||||||| ||||| || ||||| | | ||| |||||||||||| || |
|
|
| T |
5504639 |
tagagcagttctgcaaagacactgtcatcacaatttggcattaccatggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgt |
5504738 |
T |
|
| Q |
490 |
taacagacttcgtgtcatagatggatcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
568 |
Q |
| |
|
| ||||||| || ||| | ||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
5504739 |
tgacagactccgagtcgtcgatggttcaacgtttactgaatcaccaggaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
392 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
441 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
392 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
441 |
Q |
| |
|
||||| |||||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University