View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_43 (Length: 230)
Name: NF2274_low_43
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_43 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 46091924 - 46092145
Alignment:
| Q |
9 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
108 |
Q |
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| T |
46091924 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
46092023 |
T |
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| Q |
109 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
208 |
Q |
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| T |
46092024 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
46092123 |
T |
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| Q |
209 |
aaaatatgctcagaaagaaggc |
230 |
Q |
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| T |
46092124 |
aaaatatgctcagaaagaaggc |
46092145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 46086824 - 46087041
Alignment:
| Q |
12 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
111 |
Q |
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| T |
46086824 |
tcatccaaaagtgggaagtttacattattaaattgctttgatttgggctctggaagtttagcatgtggggttaaagaaagtgtgaagctctatgttaaca |
46086923 |
T |
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| Q |
112 |
atattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaa |
211 |
Q |
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| T |
46086924 |
atattagatctgctcatgttgaaaaagcaagacatgatgcaatccaatctgctcttgttgatgctgcttcacagggtatgtcgccaattgtttcagaaaa |
46087023 |
T |
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| Q |
212 |
atatgctcagaaagaagg |
229 |
Q |
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| T |
46087024 |
acatgcgcagaaacaagg |
46087041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 37476517 - 37476647
Alignment:
| Q |
12 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
111 |
Q |
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|||||| | ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||| ||||| ||| | || || |||||| | ||| |
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| T |
37476517 |
tcatcccagagtggaaagttcacattattaaactgttttgacatgggttctggaacgttggcatgtgctgtcaaagaaggcgtcaaactctatttttaca |
37476616 |
T |
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| Q |
112 |
atattagatcttctcatgttgaaaaagcaag |
142 |
Q |
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| T |
37476617 |
gtattagatctactcatgttgaaaaagcaag |
37476647 |
T |
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