View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2274_low_45 (Length: 216)

Name: NF2274_low_45
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2274_low_45
NF2274_low_45
[»] chr5 (13 HSPs)
chr5 (15-213)||(701295-701493)
chr5 (15-216)||(30002073-30002274)
chr5 (23-216)||(15068532-15068726)
chr5 (15-216)||(8409062-8409262)
chr5 (23-216)||(667441-667635)
chr5 (23-216)||(11917477-11917671)
chr5 (23-216)||(27886243-27886437)
chr5 (40-133)||(35359344-35359437)
chr5 (166-216)||(42544720-42544770)
chr5 (166-212)||(2226850-2226896)
chr5 (166-216)||(9161050-9161100)
chr5 (166-216)||(35359003-35359053)
chr5 (166-216)||(38433764-38433814)
[»] chr6 (6 HSPs)
chr6 (23-216)||(12270618-12270812)
chr6 (33-123)||(5866933-5867023)
chr6 (165-216)||(5874112-5874163)
chr6 (166-216)||(35040186-35040236)
chr6 (167-216)||(10494343-10494392)
chr6 (169-216)||(15859795-15859842)
[»] chr2 (8 HSPs)
chr2 (23-216)||(16578707-16578901)
chr2 (23-216)||(36413457-36413651)
chr2 (23-216)||(9811452-9811646)
chr2 (40-133)||(42785208-42785305)
chr2 (166-216)||(18356965-18357015)
chr2 (166-216)||(42785595-42785645)
chr2 (74-110)||(26294178-26294214)
chr2 (166-216)||(44979740-44979790)
[»] chr7 (11 HSPs)
chr7 (23-216)||(3213039-3213233)
chr7 (23-216)||(11206185-11206379)
chr7 (23-216)||(12117666-12117860)
chr7 (23-216)||(47069740-47069934)
chr7 (23-213)||(47204274-47204465)
chr7 (23-216)||(10671892-10672085)
chr7 (23-132)||(8768834-8768943)
chr7 (166-216)||(31876606-31876656)
chr7 (166-213)||(32823668-32823715)
chr7 (25-107)||(11216409-11216491)
chr7 (166-216)||(27054703-27054753)
[»] chr4 (12 HSPs)
chr4 (23-216)||(29636845-29637039)
chr4 (23-216)||(50570775-50570969)
chr4 (23-216)||(36077634-36077828)
chr4 (23-216)||(42557796-42557989)
chr4 (110-216)||(29644029-29644136)
chr4 (25-126)||(5261537-5261636)
chr4 (25-107)||(51395151-51395231)
chr4 (166-216)||(30193946-30193996)
chr4 (166-216)||(6333383-6333433)
chr4 (166-201)||(51394795-51394830)
chr4 (166-216)||(32136759-32136809)
chr4 (166-216)||(40900049-40900099)
[»] chr3 (12 HSPs)
chr3 (23-216)||(35402027-35402221)
chr3 (23-216)||(51149485-51149678)
chr3 (23-216)||(10369283-10369477)
chr3 (23-216)||(33361025-33361219)
chr3 (23-216)||(34794656-34794849)
chr3 (90-216)||(4669531-4669658)
chr3 (23-100)||(4669416-4669493)
chr3 (43-97)||(9817756-9817810)
chr3 (166-216)||(9827749-9827799)
chr3 (166-216)||(6004358-6004408)
chr3 (180-216)||(20038451-20038487)
chr3 (180-216)||(55467622-55467658)
[»] chr8 (5 HSPs)
chr8 (23-216)||(3006390-3006583)
chr8 (23-216)||(5803062-5803257)
chr8 (166-216)||(14549295-14549345)
chr8 (166-216)||(18169991-18170041)
chr8 (166-216)||(18633558-18633608)
[»] scaffold0308 (1 HSPs)
scaffold0308 (23-216)||(5710-5904)
[»] chr1 (7 HSPs)
chr1 (23-216)||(5155150-5155344)
chr1 (15-216)||(20493820-20494025)
chr1 (23-216)||(8211350-8211546)
chr1 (23-138)||(29707928-29708043)
chr1 (166-216)||(33474509-33474559)
chr1 (166-216)||(11899077-11899127)
chr1 (188-216)||(33769944-33769972)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 701493 - 701295
Alignment:
Q  15 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  701493 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgcaatgctattttggaacttcaagttctttttttgaataa 701394  T
Q  115 ttaaaattgcttggtactagttggcaatattaagttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  701393 ttaaaattgcttggtactagttggcaatattaagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattg 701295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 30002274 - 30002073
Alignment:
Q  15 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataa 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  30002274 tatccagctattattttggttctgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaaattctttttttgaataa 30002175  T
Q  115 ttaaaattgcttggtactagttggcaatattaagttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattgg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30002174 ttaaaattgcttggtactagttggcaatattaagttaatgtaatttttttatttatctcgtgattaaccgcatcaactgaaccaatccaaaccgcattgg 30002075  T
Q  215 tt 216  Q
    ||    
T  30002074 tt 30002073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 15068726 - 15068532
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15068726 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 15068627  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15068626 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 15068532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 8409262 - 8409062
Alignment:
Q  15 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataa 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  8409262 tatccagctattattttggtactttaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttt-taataa 8409164  T
Q  115 ttaaaattgcttggtactagttggcaatattaagttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattgg 214  Q
    ||||||||| |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8409163 ttaaaattgattggtactggttggcaatattaagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattgg 8409064  T
Q  215 tt 216  Q
    ||    
T  8409063 tt 8409062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 667441 - 667635
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  667441 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttttttttttgaataattaaaatt 667540  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  667541 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgatttactgcatcaactgaaccaatccaaaccgcattggtt 667635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 11917671 - 11917477
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11917671 tattattttggtagtgtaattttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 11917572  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| ||| |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11917571 gcttggtactagttggcaatattagagtaaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 11917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 27886243 - 27886437
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27886243 tattattttggtaatgtaatgttattttagataaataatttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 27886342  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||| ||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27886343 gcttggtactggttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 27886437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 35359437 - 35359344
Alignment:
Q  40 aatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaattgcttggtacta 133  Q
    ||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  35359437 aatgttattttggatagataacttttattggtattgtaacgttattttggaacttcaagttctttttttgaatatttaaaattgcttggtacta 35359344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 42544770 - 42544720
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  42544770 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 42544720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 2226850 - 2226896
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcatt 212  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||    
T  2226850 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcatt 2226896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 9161100 - 9161050
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||| ||||| |||||||  ||| ||||||||||||||||||||||||    
T  9161100 tttatcttgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 9161050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 35359053 - 35359003
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||||||| |||| ||||||| ||| |||||||    
T  35359053 tttatctcgcgataaaccgcatcaaccgaactaatccaagccgtattggtt 35359003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 38433814 - 38433764
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| |||||||||||| |||||||||||    
T  38433814 tttatctcgcgataaaccgcacaaaccgaaccaatccaagccgcattggtt 38433764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 12270812 - 12270618
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12270812 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 12270713  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12270712 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 12270618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 5866933 - 5867023
Alignment:
Q  33 gtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaattg 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5866933 gtactgtaatgttattttagataaataacttttatttgtattgtaatgctattttggaacttcaagttctttttttgaataattaaaattg 5867023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 5874112 - 5874163
Alignment:
Q  165 atttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5874112 atttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 5874163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 35040186 - 35040236
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  35040186 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 35040236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 10494343 - 10494392
Alignment:
Q  167 ttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  10494343 ttatctcgcgataaaccgcatcaaccgaaccaatctaagccgcattggtt 10494392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 15859842 - 15859795
Alignment:
Q  169 atctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  15859842 atctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 15859795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 16578901 - 16578707
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16578901 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 16578802  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578801 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 16578707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 36413457 - 36413651
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36413457 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 36413556  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413557 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 36413651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 9811646 - 9811452
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9811646 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 9811547  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9811546 gtttggtactagttggcaatattagagttaatgtaaattttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 9811452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 42785208 - 42785305
Alignment:
Q  40 aatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttg----gaataattaaaattgcttggtacta 133  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||     | ||| |||||||||||||||||||    
T  42785208 aatgttattttggatagataacttttattggtattgtaatgttattttggaacttcaagttcttttttttttcgtatatttaaaattgcttggtacta 42785305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 18357015 - 18356965
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  18357015 tttatctcgcgataaaccgcatcaacagaaccaatccaagccgcattggtt 18356965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 42785595 - 42785645
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  42785595 tttatctcgcgataaaccgcatcaatcgaaccaatccaaaccgcattggtt 42785645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 26294178 - 26294214
Alignment:
Q  74 tgtaatgctattttggaacttcaagttcttttttgga 110  Q
    |||||||||||||||||||||||||||||||||||||    
T  26294178 tgtaatgctattttggaacttcaagttcttttttgga 26294214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 44979740 - 44979790
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  | | ||||||||||||||||||||||||    
T  44979740 tttatctcgcgataaaccgcacaagccgaaccaatccaaaccgcattggtt 44979790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 3213039 - 3213233
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3213039 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 3213138  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| | |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3213139 gcttggtactagttggcaatattagacttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 3213233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 11206185 - 11206379
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11206185 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 11206284  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206285 gtttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 11206379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 12117860 - 12117666
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12117860 tattattttggtactgtaatgttattttagataaataatttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 12117761  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12117760 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 12117666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 47069934 - 47069740
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47069934 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 47069835  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47069834 gtttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 47069740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 47204274 - 47204465
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47204274 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 47204373  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattg 213  Q
    |||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47204374 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaattcaaaccgcattg 47204465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 10672085 - 10671892
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10672085 tattattttagtactgtaatgttattttagataaataacttttattggtattgtaatgctattttgg-acttcaagttctttttttgaataattaaaatt 10671987  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10671986 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaactgcatcaactgaaccaatccaaaccgcattggtt 10671892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 8768834 - 8768943
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8768834 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 8768933  T
Q  123 gcttggtact 132  Q
    ||||||||||    
T  8768934 gcttggtact 8768943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 31876606 - 31876656
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  || |||||||||||||||||||||||||    
T  31876606 tttatctcgcgataaaccgcacaaattgaaccaatccaaaccgcattggtt 31876656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 32823715 - 32823668
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattg 213  Q
    ||||||||||||| |||||||  ||| |||||||||||||||||||||    
T  32823715 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattg 32823668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 11216491 - 11216409
Alignment:
Q  25 ttattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttt 107  Q
    |||||||| | || |||||||||||| || |||  | ||||||||||| | ||||  |||||||||||||||||| |||||||    
T  11216491 ttattttgatgctataatgttattttggaaaaaccagttttattggtagtataattttattttggaacttcaagtactttttt 11216409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 27054703 - 27054753
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||| ||| |||||||  ||| ||||||||||||||||||||||||    
T  27054703 tttatctcgtgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 27054753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 29637039 - 29636845
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29637039 tattattttggtactggaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 29636940  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29636939 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 29636845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 50570775 - 50570969
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50570775 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 50570874  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50570875 gtttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 50570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 36077828 - 36077634
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  36077828 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgcttttttggaacttcaagttctttttttgaataattaaaatt 36077729  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36077728 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgtattggtt 36077634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 42557989 - 42557796
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  42557989 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgttattttgg-acttcaagttctttttttgaataattaaaatt 42557891  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42557890 gtttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 42557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 29644029 - 29644136
Alignment:
Q  110 aataattaaaattgcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccg 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  29644029 aataattaaaattgcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaattgaaccaatccaaaccg 29644128  T
Q  209 cattggtt 216  Q
    ||||||||    
T  29644129 cattggtt 29644136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 5261537 - 5261636
Alignment:
Q  25 ttattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaattgc 124  Q
    |||||||||| |||  |||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||    
T  5261537 ttattttggttctg--atgttattttggatagataacttttattggtattgtaatgttattttggaacttcaagttctttttttggatatttaaaattgc 5261634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 51395231 - 51395151
Alignment:
Q  25 ttattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttt 107  Q
    |||||||||| |||  |||||||||| || | |||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  51395231 ttattttggttctg--atgttattttggaaagataacttttattggtattgtaatgttattttggaacttcaggttttttttt 51395151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 30193946 - 30193996
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  30193946 tttatctcgcgataaaccgcataaaccgaaccaatccaaaccgcattggtt 30193996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 6333433 - 6333383
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  6333433 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 6333383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 51394830 - 51394795
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatc 201  Q
    ||||||||||||| ||||||||||||||||||||||    
T  51394830 tttatctcgcgataaaccgcatcaactgaaccaatc 51394795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 32136809 - 32136759
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||| |||| |||||||  ||| ||||||||||||||||||||||||    
T  32136809 tttatctcacgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 32136759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 40900049 - 40900099
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  |||  |||||||||||||||||||||||    
T  40900049 tttatctcgcgataaaccgcacaaaccaaaccaatccaaaccgcattggtt 40900099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 35402027 - 35402221
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35402027 tattactttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 35402126  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35402127 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 35402221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 51149485 - 51149678
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  51149485 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttgg-acttcaagttctttttttgaataattaaaatt 51149583  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149584 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 51149678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 10369477 - 10369283
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  10369477 tattattttggtactgtaatgttattttagataaataacttttattggtattttaatgctattttggaacttcaagttctttttttgaataattaaaatt 10369378  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||| ||||||||||||  ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10369377 gcttggtactaattggcaatattagtgttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 10369283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 33361219 - 33361025
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  33361219 tattattttggtactgtagtgttattttagataaataacttttattggtattgtaatactattttggaacttcaagttcttttttttaataattaaaatt 33361120  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361119 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 33361025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 34794849 - 34794656
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34794849 tattattttggtattgtaatgttattttagataaataactgttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 34794750  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34794749 gcttggtactagttggcaatattagagttaatgtaa-ttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 34794656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 90 - 216
Target Start/End: Original strand, 4669531 - 4669658
Alignment:
Q  90 aacttcaagttcttttttggaataattaaaattgcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatc 188  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||    
T  4669531 aacttcaagttctttttttgaataattaaaattgcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatc 4669630  T
Q  189 aactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||||||||||||||||||    
T  4669631 aactgaaccaatccaaaccgcattggtt 4669658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 4669416 - 4669493
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  4669416 tattattttggtactgtaatgttattttagataaataactttcattggtattgtaatgctatttttgaacttcaagtt 4669493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 9817756 - 9817810
Alignment:
Q  43 gttattttagataaataacttttattggtattgtaatgctattttggaacttcaa 97  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  9817756 gttattttggataaataacttttattggtattgtaattttattttggaacttcaa 9817810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 9827749 - 9827799
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| |||||||    
T  9827749 tttatctcgcgataaaccgcaccaactgaaccaatccaagccgtattggtt 9827799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 6004358 - 6004408
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||| ||||||||||||||||||||    
T  6004358 tttatctcgcgataaaccgcacaaaccgaatcaatccaaaccgcattggtt 6004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 20038487 - 20038451
Alignment:
Q  180 aaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  20038487 aaccgcaacaattgaaccaatccaaaccgcattggtt 20038451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 55467622 - 55467658
Alignment:
Q  180 aaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  55467622 aaccgcaccaactgatccaatccaaaccgcattggtt 55467658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 3006390 - 3006583
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  3006390 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataatt-aaatt 3006488  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3006489 gcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 3006583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 5803062 - 5803257
Alignment:
Q  23 tattattttggtactgtaatgtta-ttttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaat 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5803062 tattattttggtactgtaatgttaattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaat 5803161  T
Q  122 tgcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||||||||| ||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5803162 tgcttggtactagttggcagtattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 5803257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 14549345 - 14549295
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  14549345 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 14549295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 18169991 - 18170041
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  18169991 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 18170041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 18633558 - 18633608
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  18633558 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 18633608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 5710 - 5904
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5710 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgttattttggaacttcaagttctttttttgaataattaaaatt 5809  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    | |||||||||||| ||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5810 gattggtactagttcgcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 5904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 5155150 - 5155344
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  5155150 tattattttggtattgtagtgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttttaataattaaaatt 5155249  T
Q  123 gcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||| ||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155250 gcttggtactagttggtaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 5155344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 20494025 - 20493820
Alignment:
Q  15 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctt--ttttggaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  20494025 tatccagctattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttttgtaat 20493926  T
Q  113 aattaaaattgcttggtactagttggcaatatta-agttaatg-taannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgca 210  Q
    ||||||||||| |||||| ||||||||||||||| |||||||| |||       |||||||||| |||||||||||||||||||||||||||||||||||    
T  20493925 aattaaaattgtttggtattagttggcaatattagagttaatgttaatttttttatttatctcgagattaaccgcatcaactgaaccaatccaaaccgca 20493826  T
Q  211 ttggtt 216  Q
    ||||||    
T  20493825 ttggtt 20493820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 8211546 - 8211350
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttctt--ttttggaataattaaaa 120  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||    
T  8211546 tattattttggtattgtagtgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttttttaataattaaaa 8211447  T
Q  121 ttgcttggtactagttggcaatatta-agttaatgtaannnnnnnatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8211446 ttgcttggtactagttggcaatattagagttaatgtaatttttttatttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 8211350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 29707928 - 29708043
Alignment:
Q  23 tattattttggtactgtaatgttattttagataaataacttttattggtattgtaatgctattttggaacttcaagttcttttttggaataattaaaatt 122  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29707928 tattattttggtattgtaatgttattttatataaataacttttattggtattgtaatgctattttggaacttcaagttctttttttgaataattaaaatt 29708027  T
Q  123 gcttggtactagttgg 138  Q
    ||||||||||||||||    
T  29708028 gcttggtactagttgg 29708043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 33474559 - 33474509
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||||||||||    
T  33474559 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgcattggtt 33474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 11899127 - 11899077
Alignment:
Q  166 tttatctcgcgattaaccgcatcaactgaaccaatccaaaccgcattggtt 216  Q
    ||||||||||||| |||||||  ||| |||||||||||||||| |||||||    
T  11899127 tttatctcgcgataaaccgcacaaaccgaaccaatccaaaccgtattggtt 11899077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 33769972 - 33769944
Alignment:
Q  188 caactgaaccaatccaaaccgcattggtt 216  Q
    |||||||||||||||||||||||||||||    
T  33769972 caactgaaccaatccaaaccgcattggtt 33769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University