View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_46 (Length: 214)
Name: NF2274_low_46
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 7809108 - 7808922
Alignment:
| Q |
13 |
cagatacatacaaaacttgtgataaaaacaatgactaatggttttagttttgtcatatctcaatagtttttcttaatcaattttttaatacaaacgtaca |
112 |
Q |
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| T |
7809108 |
cagatacatacaaaacttgtgataaaaacaatgactaatggttttagttttgtcatatctcaatagtttttcttaatcaattttttaatacaaacgtaca |
7809009 |
T |
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| Q |
113 |
taaggtgaaaacatagaatcaggttagcattgtacctgggcaagttacaatctttaggtttccatctccactttgtgtagaacaaat |
199 |
Q |
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| T |
7809008 |
taaggtgaaaacatagaatcaggttagcattgtacctgggcaagttacaatcatttggttgccatctccactttgtgtagaacaaat |
7808922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 7816693 - 7816638
Alignment:
| Q |
144 |
gtacctgggcaagttacaatctttaggtttccatctccactttgtgtagaacaaat |
199 |
Q |
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| T |
7816693 |
gtacctgggcaagttacaatcatttggttgccatctccactttgtgtagaacaaat |
7816638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 37801092 - 37801044
Alignment:
| Q |
146 |
acctgggcaagttacaatctttaggtttccatctccactttgtgtagaa |
194 |
Q |
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| T |
37801092 |
accttggcaagttgcaatctttgggttgccatctccacttagtgtagaa |
37801044 |
T |
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