View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_5 (Length: 556)
Name: NF2274_low_5
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 25617127 - 25616596
Alignment:
| Q |
11 |
acatcatcacaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaa |
110 |
Q |
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| T |
25617127 |
acatcattccaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaa |
25617028 |
T |
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| Q |
111 |
atttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctctaaaatcacattctcccatcccttaacaatagccat |
210 |
Q |
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| T |
25617027 |
atttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctcaaaaatcacattctcccatcccttaacaatagccat |
25616928 |
T |
|
| Q |
211 |
atgcagtccttctaatagtgaagtagcttcgccttcgaggattgataagttcgcttgtttccaacttgtttgtgacatcacaaattctccattgttattt |
310 |
Q |
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| T |
25616927 |
atgcagtccttctaatagtgaagtagcttcgcattcgaggattgataagttcgcttgtttccaacttgtttgtaacatcacaaattcttcattgttattt |
25616828 |
T |
|
| Q |
311 |
cgtacacagcactcaatggatgtaataccggctctttcgttaaatgccgcatccacattacatttgagcaagccataattaggcctctcccaatctgaac |
410 |
Q |
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|||||||||||| ||||| |||||||||| |||||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
25616827 |
cgtacacagcacccaatgaatgtaataccagctcttcggttaaatgctgcatccacgttacgtttgagcaagccataattaggcctctcctaatctgaac |
25616728 |
T |
|
| Q |
411 |
tgctttgattccgaactgtaccagcccgcgtctgttgcaatctgttgacctcataccactgctgtcaagaatgcattgttttccttccaatactagctgg |
510 |
Q |
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| T |
25616727 |
tgctttgattccgaactgtaccagcccgcgtctgttgcaatctgttgacctcataccactgctgccaagaattcattgttttcctttcaacactagctg- |
25616629 |
T |
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| Q |
511 |
tagagttactcttaaactcttccacaccagttcat |
545 |
Q |
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| T |
25616628 |
--aagttactctcaaactcttccactccagttcat |
25616596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 25612416 - 25612522
Alignment:
| Q |
436 |
ccgcgtctgttgcaatctgttgacctcataccactgctgtcaagaatgcattgttttccttccaatactagctggtagagttactcttaaactcttccac |
535 |
Q |
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||||||||||||||| |||||||| ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| | || ||||||| |||||||||||| |
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| T |
25612416 |
ccgcgtctgttgcaacctgttgacttcatatcactactgccaagaacgcatagttttccttccaacactagctgatggaattactctcaaactcttccac |
25612515 |
T |
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| Q |
536 |
accagtt |
542 |
Q |
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||||||| |
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| T |
25612516 |
accagtt |
25612522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 25611669 - 25611738
Alignment:
| Q |
11 |
acatcatcacaaagtacatatagagctaatacactttattttacaggt-taatattaaaaggagaattct |
79 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
25611669 |
acatcattccaaagtacatatagagctaatacactttattctacaggtaaaatattaaaaggagaattct |
25611738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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