View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2274_low_6 (Length: 516)
Name: NF2274_low_6
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 22932847 - 22933353
Alignment:
| Q |
1 |
tatcatatctcaagcccttaccttagctgatttctcttgttcatcatgccaacccatcttcaattcttggtaacatttttgccattcctttttgttcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22932847 |
tatcatatctcaagcccttaccttagctgatttctcttgttcatcatgccaacccatcttcaattcttggtaacatttttgccattcctttttgttcaag |
22932946 |
T |
|
| Q |
101 |
tattgtcccaagttgaccaactactatacacaggttttaagtatggttgtgccaacaatttaaccttaaatggtgttgcaaagatagagaaaaatggaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
22932947 |
tattgtcccaagttgaccaactactatacacaggttttaaggatggtggtgccagcaatttaaccttaaacggtgttgcaaagatagagaaaaatggaat |
22933046 |
T |
|
| Q |
201 |
aataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcacccttttcagctaaagaactcaacaactggtaaagctttttccttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22933047 |
aataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaagaactcaacaactggtaaagctttttccttt |
22933146 |
T |
|
| Q |
301 |
tcatcaacctttgccattgctgttgttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttac |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
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|
| T |
22933147 |
tcatcaacctttgctattgctgttgttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcacctactaaggatctcaatgctttac |
22933246 |
T |
|
| Q |
401 |
ctattcagtatcttggtcttttcaatgcaagcaatgtttttggtaatttctctaaccatatttttgctgttgagtttgacactgctcaagattttgagtt |
500 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
22933247 |
ctattcaatatcttggtcttttcaatgcaagcaatgtttttggtaatttctctaaccatatttttgctgtcgagtttgacactgctcaagactttgagtt |
22933346 |
T |
|
| Q |
501 |
tgatgat |
507 |
Q |
| |
|
||||||| |
|
|
| T |
22933347 |
tgatgat |
22933353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 89 - 507
Target Start/End: Complemental strand, 22922653 - 22922238
Alignment:
| Q |
89 |
tttttgttcaagtattgtcccaagttgaccaactactatacacaggttttaagtatggttgtgccaacaatttaaccttaaatggtgttgcaaagataga |
188 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||||||||||||||||||||||| ||| | || | || || |||||||||||||| | ||| ||||||| |
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|
| T |
22922653 |
tttttgtaccagttttgtctcaagttgaccaactactatacacaggttttaaggatgttggtccaaaaaacctaaccttaaatggtatagcagagataga |
22922554 |
T |
|
| Q |
189 |
gaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcacccttttcagctaaagaactcaacaactggtaaa |
288 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | |||| |||| ||||||||||| |||| || |||||| |||||||| ||| ||||||||| |
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|
| T |
22922553 |
aaaaaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaactactggtaaa |
22922454 |
T |
|
| Q |
289 |
gctttttccttttcatcaacctttgccattgctgttgttcctgagtatcctagagttggtggtcatggcatggctttcacaatagcccctacaaaggatc |
388 |
Q |
| |
|
| ||| || || |||||| | ||||| ||||| ||||||||| ||||||| | ||||||| |||||||||||||| || |||| |||| |||| |||| |
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|
| T |
22922453 |
gttttctctttctcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtggccatggcatggcttttactatagtcccttcaaaagatc |
22922354 |
T |
|
| Q |
389 |
tcaaagctttacctattcagtatcttggtcttttcaatgcaagcaatgtttttggtaatttctctaaccatatttttgctgttgagtttgacactgctca |
488 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| | ||| |||| || | |||||||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
22922353 |
tcaaagctttacctagtcaatatcttggtcttctgaattcaag---tgatgttggtaatttctctaaccatctttttgctgttgagtttgacactgttca |
22922257 |
T |
|
| Q |
489 |
agattttgagtttgatgat |
507 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
22922256 |
agattttgagtttggtgat |
22922238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 503
Target Start/End: Complemental strand, 22880693 - 22880644
Alignment:
| Q |
454 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttga |
503 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22880693 |
aaccatgtttttgctgttgagtttgacactgttcaagattttgagtttga |
22880644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 22858591 - 22858538
Alignment:
| Q |
454 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgat |
507 |
Q |
| |
|
|||||| | |||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
22858591 |
aaccatgtgtttgctgttgagcttgacactattcaagatcttgagtttgatgat |
22858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 22889421 - 22889368
Alignment:
| Q |
454 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgat |
507 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
22889421 |
aaccatgtttttggtgttgagcttgacactcgtcaaaattttgagtttgatgat |
22889368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 152 - 484
Target Start/End: Complemental strand, 15628674 - 15628345
Alignment:
| Q |
152 |
ccaacaatttaaccttaaatggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactc |
251 |
Q |
| |
|
|||||||| | ||||| |||||| ||||| |||||||||||||||| || ||||||||||||||| | ||| ||| ||||||||||||||||||||| |
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|
| T |
15628674 |
ccaacaatcttaccttgaatggttttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttactc |
15628575 |
T |
|
| Q |
252 |
tcacccttttcagctaaagaactcaacaactggtaaagctttttccttttcatcaacctttgccattgctgttgttcctgagtatcctagagttggtggt |
351 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| || ||||| ||| | ||||| |||||||||| ||||||||||||| | |||||| |
|
|
| T |
15628574 |
attaccttttcagctaaggaactcgacaactcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatcctaatataggtggt |
15628475 |
T |
|
| Q |
352 |
catggcatggctttcacaatagcccctacaaaggatctcaaagctttacctattcagtatcttggtcttttcaatgcaagcaatgtttttggtaatttct |
451 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||| || ||| ||||||||||||||||||||||| | || |||| |||||||||| | |
|
|
| T |
15628474 |
catggcatggctttcacaatagcaactactaaggatctcgaaggttcgcctcttcagtatcttggtcttttcaattcgagtaatg---ttggtaattttt |
15628378 |
T |
|
| Q |
452 |
ctaaccatatttttgctgttgagtttgacactg |
484 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||| |
|
|
| T |
15628377 |
cgaaccatctttttgctgttgaatttgacactg |
15628345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 17394032 - 17394086
Alignment:
| Q |
346 |
ggtggtcatggcatggctttcacaatagcccctacaaaggatctcaaagctttac |
400 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
17394032 |
ggtggtcatggtatgactttcactatagcaactacaaaggatctcaaagctttac |
17394086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 15628808 - 15628760
Alignment:
| Q |
21 |
ccttagctgatttctcttgttcatcatgccaacccatcttcaattcttg |
69 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
15628808 |
ccttagctgaattctcttattcatcatgccaacccttgttcaattcttg |
15628760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 24382732 - 24382666
Alignment:
| Q |
182 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgcttttta |
248 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| | |||||||| ||||||||||| |
|
|
| T |
24382732 |
agatagagaaaaatggtataataagattaacaaatgaaacaagtagattaatggttcatgcttttta |
24382666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 36386047 - 36386113
Alignment:
| Q |
182 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgcttttta |
248 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| | |||||||| ||||||||||| |
|
|
| T |
36386047 |
agatagagaaaaatggtataataagattaacaaatgaaacaagtagattaatggttcatgcttttta |
36386113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 507
Target Start/End: Original strand, 21150585 - 21150638
Alignment:
| Q |
454 |
aaccatatttttgctgttgagtttgacactgctcaagattttgagtttgatgat |
507 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
21150585 |
aaccatgtttttggtgttgagcttgacactgttcaagattttgagtttgatgat |
21150638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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