View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_low_9 (Length: 482)
Name: NF2274_low_9
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 8467504 - 8467805
Alignment:
| Q |
18 |
cttctggttttgttgcttcttctccgcaacggagtcttttttctccttcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagc |
117 |
Q |
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| T |
8467504 |
cttctggttttgttgcttcttctccgcaacagagtcttttttctccttcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagc |
8467603 |
T |
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| Q |
118 |
ttccctctcttggtttgattcttaagctgcaagcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatag |
217 |
Q |
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| T |
8467604 |
ttccctctcttggtttgattcttaagctgcaagcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatag |
8467703 |
T |
|
| Q |
218 |
cgtaagggcttgagccattcctctcctttagagccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagtagtatga |
317 |
Q |
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| T |
8467704 |
cgtaagggcttgagccattcctctcctttagagccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagaagtttga |
8467803 |
T |
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| Q |
318 |
aa |
319 |
Q |
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|| |
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| T |
8467804 |
aa |
8467805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 304 - 477
Target Start/End: Complemental strand, 414630 - 414457
Alignment:
| Q |
304 |
aaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatt |
403 |
Q |
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| T |
414630 |
aaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatt |
414531 |
T |
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| Q |
404 |
tggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagct |
477 |
Q |
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| T |
414530 |
tggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagct |
414457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 330 - 476
Target Start/End: Original strand, 37211616 - 37211762
Alignment:
| Q |
330 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
429 |
Q |
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|||||| |||||| ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| | |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
430 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagc |
476 |
Q |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagc |
37211762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 37217299 - 37217444
Alignment:
| Q |
331 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
430 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
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| Q |
431 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagc |
476 |
Q |
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|||||||||||| ||| |||||||||||| | ||| |||||||| |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagc |
37217444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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