View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2275_high_3 (Length: 208)

Name: NF2275_high_3
Description: NF2275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2275_high_3
NF2275_high_3
[»] chr1 (3 HSPs)
chr1 (36-135)||(36675380-36675479)
chr1 (37-135)||(36669720-36669818)
chr1 (156-208)||(36675498-36675550)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 36675380 - 36675479
Alignment:
Q  36 gaacataagaaggaataaaccaaaaaattccttcaaggagcccataatttatagagtaatagaagataaataaacattacaatagctaggcacatatctt 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675380 gaacataagaaggaataaaccaaaaaattccttcaaggagcccataatttatagagtaatagaagataaataaacattacaatagctaggcacatatctt 36675479  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 36669720 - 36669818
Alignment:
Q  37 aacataagaaggaataaaccaaaaaattccttcaaggagcccataatttatagagtaatagaagataaataaacattacaatagctaggcacatatctt 135  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| || || |||||||| | |||||||||||||||| ||||    
T  36669720 aacataagaaggaataaaccaaaaaattcctttaaggagcccatgatttatagaataataaaatatgaataaacaatgcaatagctaggcacatctctt 36669818  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 36675498 - 36675550
Alignment:
Q  156 tttaatttataaggctaacaaactaatgcatcttaattcaacattgcctcttg 208  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  36675498 tttaatttataaggttaaaaaactaatgaatcttaattcaacattgcctcttg 36675550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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