View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2275_low_1 (Length: 266)
Name: NF2275_low_1
Description: NF2275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2275_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 37990618 - 37990757
Alignment:
| Q |
11 |
cacagataaacaaaataagatcagaaataaaaacaaagaaacacatgaaagaagggttccacagtgtatgcaattggttattacattgtt-ggaaggaag |
109 |
Q |
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| T |
37990618 |
cacagataaacaaaataagatcagaaataaaaacaaagaaacacatgaatgaggggttccacagtgtatgcaattggttattacattgttgggaaggaag |
37990717 |
T |
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| Q |
110 |
cacaagataggataatgaatcaattgagtatatccatgaa |
149 |
Q |
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| T |
37990718 |
cacaagataggataatgaatcaattgagtatatccgtgaa |
37990757 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 37990748 - 37990823
Alignment:
| Q |
173 |
tatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccgggagccacctagcgttaatta |
248 |
Q |
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| T |
37990748 |
tatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccagcagccacctagcgttaatta |
37990823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 33166025 - 33166104
Alignment:
| Q |
166 |
aatgatgtatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccgggagccacctagcgttaa |
245 |
Q |
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| T |
33166025 |
aatggtgtatccgtgaatggagaaataacttcagcttgcattgtgtcccaaaccagtatccagtagccacgtagcgttaa |
33166104 |
T |
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