View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2275_low_2 (Length: 250)
Name: NF2275_low_2
Description: NF2275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2275_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 46628697 - 46628572
Alignment:
| Q |
116 |
caatatttgatgaaaaatttgcttctattctatggttaaaaactagtatagcaatcattcaacgaatccaacccaaaagtccaaaagcatgtaatataag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628697 |
caatatttgatgaaaaatttgcttctattctatggttaaaaactagtatagcaatcattcaacgaatccaacccaaaagtccaaaagcatgtaatataag |
46628598 |
T |
|
| Q |
216 |
atgggccagtgatgatgcattttctt |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46628597 |
atgggccagtgatgatgcattttctt |
46628572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 46628837 - 46628736
Alignment:
| Q |
1 |
catatgttaaatagtacatatatgtggtaaatgtcggtaacagcagcaaatatgtttcctgagtcttggaccttagttgaatatataatatcaataattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46628837 |
catatgttaaatagtacatatatgtggtaaatgtcggtaacagcagcaaatatgtttcctgagtcttggaccttagttgaatatataatatcaataattt |
46628738 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
|
|
| T |
46628737 |
at |
46628736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University