View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2276_high_1 (Length: 546)
Name: NF2276_high_1
Description: NF2276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2276_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Original strand, 42019022 - 42019519
Alignment:
| Q |
21 |
atcgtcacccagaaaactttcaccatcatattcccacatgcaatc----------attgtccaagtcannnnnnn-accattgttatcatcaaacatccc |
109 |
Q |
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| T |
42019022 |
atcgtcacccagaaaactttcagcatcatattcccacatgcaatccttcacaatcattgtccaagtcattttttttaccattgttatcatcaaacatccc |
42019121 |
T |
|
| Q |
110 |
tttaaaacatgtcaaaataagtttatcaagcaatttttgaaa-------agatgtttttcaattgatattggcatatagttttttaatttacttaaaaag |
202 |
Q |
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| T |
42019122 |
tttaaaacatgccaaaataagtttatcaagcaatttttaaaatttttaaagatgtttttcaattaatattggcatatagttttttaatttacttaaaaag |
42019221 |
T |
|
| Q |
203 |
atttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaactcagtcaaacaagcactttgataccaagtaccatc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
42019222 |
atttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaaaatgcaacacatt--aacaagcactttgataccaagtaccatc |
42019319 |
T |
|
| Q |
303 |
atatggttgttccaggtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttgattctca---atgacccatagtacata |
399 |
Q |
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| T |
42019320 |
atatggttgttccaagtggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttgattctcaattatcacccatagaacata |
42019419 |
T |
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| Q |
400 |
gaaggaagaaccttattcataaaataatacagaggaaggaaccttgcatgattaggtggtgacaaacaactcaatgttagagaagatgagacatgtgacc |
499 |
Q |
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| T |
42019420 |
gaaggaagaaccttattcataaaataatacagaggaaggaactttgcatgattaggtggtgacaaacaacccaatgttagagaagatgagacatgtgacc |
42019519 |
T |
|
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Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Original strand, 1252249 - 1252661
Alignment:
| Q |
21 |
atcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagtcannnnnnn-accattgttatcatcaaacatccctttaaaacat |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1252249 |
atcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagtcattttttttaccattgttatcatcaaacatccctttaaaacat |
1252348 |
T |
|
| Q |
120 |
gtcaaaataagtttatcaagcaatttttgaaaagatgtttttcaattgatattggcatatagttttttaatttacttaaaaagatttgtcttataaaaga |
219 |
Q |
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| T |
1252349 |
gtcaaaataagtttatcaagcaatttttaaaaagatgtttttcaattaatattggcatatagttttttaatttacttcaa--gatttgtcttgtaaaaga |
1252446 |
T |
|
| Q |
220 |
taggttgaacattcttacagtatattatttcaaaacagaaaatgcaactcagtcaaacaagcactttgataccaagtaccatcatatggttgttccaggt |
319 |
Q |
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| T |
1252447 |
taggttgaacattcttacagtatattatttcaaaacagaaaatgcaacacagtcaaacaagcactttgataccaagtaccatcatatggttgttccaggt |
1252546 |
T |
|
| Q |
320 |
ggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttgattctca---atgacccatagtacatagaaggaagaacc-ttat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||| |
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| T |
1252547 |
ggtaaaagactgcagcaacttaactggtcacaacaatcaataaatggaagcatttgattctcaattatcacccatagaacatagaaggaagaacctttat |
1252646 |
T |
|
| Q |
416 |
tcataaaataataca |
430 |
Q |
| |
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||||||||||||||| |
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|
| T |
1252647 |
tcataaaataataca |
1252661 |
T |
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