View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2276_high_3 (Length: 282)
Name: NF2276_high_3
Description: NF2276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2276_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 68 - 266
Target Start/End: Original strand, 3806981 - 3807179
Alignment:
| Q |
68 |
aataaaaacacgacttgaataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtgtagaccaat |
167 |
Q |
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| T |
3806981 |
aataaaaacacgacttggataaatgctatatttgtttattaataaatatgatttaaatttgcttttgttccaaaatcatttgattttggtttagaccaat |
3807080 |
T |
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| Q |
168 |
atagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccaga |
266 |
Q |
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| T |
3807081 |
atagataacacaagttctttggagactaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtggaacagtgtgtggctgcaccaga |
3807179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 3775101 - 3775222
Alignment:
| Q |
145 |
atttgattttggtgtagaccaatatagataacacaagttctttggagacaaagataaggagtgccaccaaagaagctattgaagaaatagaaagctgtgg |
244 |
Q |
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| T |
3775101 |
atttaattttggtgcagaccaatatatacagaacaagttctttggagacaaagataaggagtgccactaaagaagctattcaagaaataaaaagctgtga |
3775200 |
T |
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| Q |
245 |
aacagtgtgtggctgcaccaga |
266 |
Q |
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| T |
3775201 |
agcagtgtgtggctgcaacaga |
3775222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 3806915 - 3806967
Alignment:
| Q |
23 |
tgtgtgtgttatatttttaaattaatttcaatacttatcagcaaaaataaaaa |
75 |
Q |
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| T |
3806915 |
tgtgtgtgtgttatttttaaattaatttcaatacttatcagcaaaaataaaaa |
3806967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 3775024 - 3775072
Alignment:
| Q |
108 |
aataaatatgatttaaatttgcttttgttccaaaatcatttgattttgg |
156 |
Q |
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| T |
3775024 |
aataaatatgatttaaattttcttttgttccaaaagcattagattttgg |
3775072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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