View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2276_low_2 (Length: 433)

Name: NF2276_low_2
Description: NF2276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2276_low_2
NF2276_low_2
[»] chr2 (14 HSPs)
chr2 (7-433)||(39371809-39372235)
chr2 (216-337)||(39179550-39179673)
chr2 (224-338)||(39386436-39386551)
chr2 (216-337)||(39224558-39224679)
chr2 (62-121)||(39154055-39154114)
chr2 (222-298)||(39188479-39188557)
chr2 (222-296)||(39419997-39420071)
chr2 (222-290)||(39452109-39452177)
chr2 (216-298)||(39139828-39139908)
chr2 (252-298)||(39379675-39379721)
chr2 (65-107)||(39412244-39412286)
chr2 (62-115)||(39453738-39453791)
chr2 (222-298)||(39145001-39145077)
chr2 (405-433)||(39379570-39379598)
[»] chr5 (1 HSPs)
chr5 (222-298)||(33563213-33563289)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Original strand, 39371809 - 39372235
Alignment:
Q  7 attttttgttgttaaaatgccattgtcaattggtggagnnnnnnnnngaaccagttaaaggaaatgggcgaaatgaatcattttaagaaattggacaact 106  Q
    ||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39371809 attttttgttgttaaaatgccattgtcaattggaggagaaaaaaaaagaaccagttaaaggaaatgggcgaaatgaatcattttaagaaattggacaact 39371908  T
Q  107 cttttttaaatttgcaaagttgaactagattagaagtaataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39371909 cttttttaaatttgcaaagttgaactagattagaagtaataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaact 39372008  T
Q  207 gatatgtgattggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnn 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  39372009 gatatgtgattggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaattttttt 39372108  T
Q  307 gaaatattcagtacaatctgcttaattttttccttcattaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372109 gaaatattcagtacaatctgcttaattttttccttcattaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttc 39372208  T
Q  407 ttgcaccttgcagattttgttgagaat 433  Q
    |||||||||||||||||||||||||||    
T  39372209 ttgcaccttgcagattttgttgagaat 39372235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 337
Target Start/End: Original strand, 39179550 - 39179673
Alignment:
Q  216 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctcc--ttttatgtatctcttctattttataaatggtttgaannnnnnngaaatat 313  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||        ||||| |    
T  39179550 ttggttttaatgctttgaaaatgaattagacttgaaatttatctctctctttttatgtatctcttctattttctaaatggtttgataaattgtgaaatgt 39179649  T
Q  314 tcagtacaatctgcttaatttttt 337  Q
    ||||| ||||||||||| ||||||    
T  39179650 tcagttcaatctgcttagtttttt 39179673  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 39386551 - 39386436
Alignment:
Q  224 aatgcttggaaagtgaagcagactt-gaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattcagtacaa 322  Q
    ||||||| |||| ||||  |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||        |||||||||||| |||    
T  39386551 aatgctttgaaaatgaattagacttcgaaatttatctctccttttatgtatctcttctagtttctaaatggtttgacaaattttgaaatattcagttcaa 39386452  T
Q  323 tctgcttaattttttc 338  Q
    |||||||| |||||||    
T  39386451 tctgcttagttttttc 39386436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 337
Target Start/End: Original strand, 39224558 - 39224679
Alignment:
Q  216 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattc 315  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||| |||  ||||||| | ||||||| ||||||||||||        |||||||||    
T  39224558 ttggttttaatgctttgaaaatgaaacagaattgaaatttatctctcttttcttgtatctatactattttctaaatggtttgacaaaatttgaaatattc 39224657  T
Q  316 agtacaatctgcttaatttttt 337  Q
    ||| || |||||||||||||||    
T  39224658 agttcattctgcttaatttttt 39224679  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 39154055 - 39154114
Alignment:
Q  62 taaaggaaatgggcgaaatgaatcattttaagaaattggacaactcttttttaaatttgc 121  Q
    |||| |||||||| ||||||||||||||||||||||  |||||||||| |||||||||||    
T  39154055 taaaagaaatgggtgaaatgaatcattttaagaaataagacaactcttgtttaaatttgc 39154114  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 39188557 - 39188479
Alignment:
Q  222 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttt--tatgtatctcttctattttataaatggtttga 298  Q
    ||||||||| |||| ||||| |||||| ||||||||||||| |||  ||||||| |||||||||||  |||||||||||    
T  39188557 ttaatgcttcgaaattgaagtagacttcaaatttatctctctttttatatgtatttcttctatttttcaaatggtttga 39188479  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 39420071 - 39419997
Alignment:
Q  222 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggttt 296  Q
    |||||||||| ||| ||||  | |||||||||||||||||| ||||| | |||||||| ||||| ||||||||||    
T  39420071 ttaatgcttgtaaaatgaaatatacttgaaatttatctctctttttacgcatctcttccattttctaaatggttt 39419997  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 39452109 - 39452177
Alignment:
Q  222 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaa 290  Q
    |||||||||||||| ||||   |||||||||| |||||||| ||||||| |||||||| ||||| ||||    
T  39452109 ttaatgcttggaaaatgaaattgacttgaaatgtatctctctttttatgcatctcttccattttctaaa 39452177  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 39139828 - 39139908
Alignment:
Q  216 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 298  Q
    ||||| ||||||| |||||| ||||  |||||| ||||| |||||||  || |||||||||||| || |||||||||||||||    
T  39139828 ttggtgttaatgcgtggaaaatgaaatagacttcaaattcatctctc--ttcatgtatctcttccatgttataaatggtttga 39139908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 39379721 - 39379675
Alignment:
Q  252 atttatctctccttttatgtatctcttctattttataaatggtttga 298  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||||||    
T  39379721 atttatctctctatttatgtatcttttctattttctaaatggtttga 39379675  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 39412286 - 39412244
Alignment:
Q  65 aggaaatgggcgaaatgaatcattttaagaaattggacaactc 107  Q
    |||||||||| |||||||||| ||||||||||| |||||||||    
T  39412286 aggaaatgggtgaaatgaatccttttaagaaataggacaactc 39412244  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 39453738 - 39453791
Alignment:
Q  62 taaaggaaatgggcgaaatgaatcattttaagaaattggacaactcttttttaa 115  Q
    ||||||||||||| |||||||||| ||||| ||||| | ||||||||| |||||    
T  39453738 taaaggaaatgggtgaaatgaatccttttatgaaatagaacaactcttgtttaa 39453791  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 39145001 - 39145077
Alignment:
Q  222 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 298  Q
    ||||||||| |||| ||||| || ||| |||| |||||||  || ||||||| |||||||||||  |||||||||||    
T  39145001 ttaatgctttgaaattgaagtaggcttcaaatatatctctttttatatgtatttcttctatttttcaaatggtttga 39145077  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 433
Target Start/End: Complemental strand, 39379598 - 39379570
Alignment:
Q  405 tcttgcaccttgcagattttgttgagaat 433  Q
    |||||||||||||||||||||||||||||    
T  39379598 tcttgcaccttgcagattttgttgagaat 39379570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 33563213 - 33563289
Alignment:
Q  222 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 298  Q
    ||||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33563213 ttaatgctttgaaaatgaaatagacttgaaatttatctctcattttatgtatctcttctattttctaaatggtttga 33563289  T

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