View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_high_12 (Length: 397)
Name: NF2277_high_12
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 14266594 - 14266986
Alignment:
| Q |
6 |
acttacacatttaagtaccttaccagatagaaaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtacca |
105 |
Q |
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| T |
14266594 |
acttacacatttaagtaccttaccagatagagaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtacca |
14266693 |
T |
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| Q |
106 |
tgtttccaagctgcatgaaataaaatgtagaaatatttcttcgttttagcatcgaatacaac-gaatgtgttcatgaaattttagtggcaagaacttgac |
204 |
Q |
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| T |
14266694 |
tgtttccaagctgcatgaaataaaatgtagaaatatttcttcgttttagcatcgaatacaacggaatgtgttcatgaaattttagtggcaagaacttgac |
14266793 |
T |
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| Q |
205 |
tttataaactttaaaatagattgcaggagttattgactcaaatactcaaacttgactatagcatcataaagaaagatatcaacgaaaaaattaagagtga |
304 |
Q |
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| T |
14266794 |
tttataaactttaaaatagattgcaggagttattgactcaaatactcaaacttgactatagcatcataaagaaagatatcaacgaaaaaattaagagtga |
14266893 |
T |
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| Q |
305 |
tgaatgttttagtgtaaaac-ctcattattctttaccatacgttattcagaaaatcttacattgtcacaagtatttagcacatcactttacac |
396 |
Q |
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| T |
14266894 |
tgaatgttttagtgttaaacactcattattctttaccatactttattcagaaaatcttacattgtcacaagtatttagcacatcactttacac |
14266986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 29110653 - 29110732
Alignment:
| Q |
27 |
accagatagaaaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtaccat |
106 |
Q |
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|||| ||||| || ||||| ||||| | ||||||||||| |||||||||||||| || || ||||||||||| |||||| |
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| T |
29110653 |
accatatagacaatgcatcaactgaaacttctgcattctccagatatccagcaaatagtattaatgccataaaataccat |
29110732 |
T |
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