View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_high_17 (Length: 294)
Name: NF2277_high_17
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 2943188 - 2943461
Alignment:
| Q |
20 |
ccgtgatcacagttcatataaaagggcattgttaaaattataacgaaggaacatttagttcatataagaatttgtttggtcagattatctctagtcagtg |
119 |
Q |
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| T |
2943188 |
ccgtgatcacagttcatataaaagggcattgtaaaaattataacgaaggaacatttagttcatataagaatttgtttggtcaaat-atctctagtcagtg |
2943286 |
T |
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| Q |
120 |
agttgaattgactgcatcacatggcaaggaaaataacaaatgcatgtccagatacttatatttaattaaggtcactacacaatattaattagaatatgtt |
219 |
Q |
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| T |
2943287 |
agttgaattgactgcatcacatggcaaggaaaataacaaatgcatgtccagatacttatatttaattaaggtcactacacaatattaattagaatatttt |
2943386 |
T |
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| Q |
220 |
tcaagtttggttatgttgtgttgcagtttgattgctccaaagagatcacgttgatggaggtactatgctgaacca |
294 |
Q |
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| T |
2943387 |
tcaagtttggttatgttgtgttgcagtttgattgctccaaagagatcacgttgatggaggtactatgctgaacca |
2943461 |
T |
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