View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2277_high_23 (Length: 251)

Name: NF2277_high_23
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2277_high_23
NF2277_high_23
[»] chr3 (36 HSPs)
chr3 (1-238)||(29387718-29387958)
chr3 (41-204)||(8364075-8364238)
chr3 (88-238)||(21784747-21784898)
chr3 (41-236)||(28132702-28132896)
chr3 (88-238)||(24252571-24252720)
chr3 (88-238)||(52655087-52655237)
chr3 (1-236)||(23164538-23164774)
chr3 (1-228)||(46791671-46791901)
chr3 (41-238)||(27729733-27729930)
chr3 (41-204)||(41707053-41707216)
chr3 (88-238)||(51939519-51939670)
chr3 (91-238)||(54430505-54430652)
chr3 (88-238)||(25599051-25599200)
chr3 (41-238)||(18408095-18408291)
chr3 (41-238)||(23067688-23067887)
chr3 (90-204)||(13401411-13401525)
chr3 (88-202)||(42009262-42009376)
chr3 (88-202)||(7767013-7767127)
chr3 (94-195)||(1255057-1255158)
chr3 (88-204)||(21596285-21596401)
chr3 (90-202)||(36538186-36538298)
chr3 (88-202)||(27303137-27303251)
chr3 (110-204)||(48627027-48627121)
chr3 (88-238)||(6715399-6715538)
chr3 (90-198)||(19965884-19965992)
chr3 (110-202)||(46904714-46904806)
chr3 (88-204)||(40152127-40152244)
chr3 (125-202)||(50677314-50677391)
chr3 (141-238)||(20762052-20762149)
chr3 (88-183)||(43905862-43905957)
chr3 (110-204)||(1649829-1649923)
chr3 (89-203)||(4207357-4207465)
chr3 (92-202)||(51146892-51147001)
chr3 (145-238)||(15987207-15987299)
chr3 (1-33)||(51939727-51939759)
chr3 (1-33)||(54430414-54430446)
[»] chr4 (26 HSPs)
chr4 (1-238)||(23426130-23426365)
chr4 (1-238)||(32130754-32130993)
chr4 (41-238)||(27632301-27632498)
chr4 (41-238)||(53011616-53011812)
chr4 (1-238)||(11681706-11681947)
chr4 (1-238)||(11689985-11690226)
chr4 (88-238)||(19661329-19661479)
chr4 (1-238)||(28463552-28463792)
chr4 (103-238)||(41038215-41038350)
chr4 (88-238)||(23256544-23256693)
chr4 (1-238)||(29221585-29221827)
chr4 (88-236)||(29579830-29579978)
chr4 (103-238)||(44478004-44478140)
chr4 (88-202)||(35653980-35654094)
chr4 (88-204)||(21791545-21791661)
chr4 (42-238)||(16072498-16072698)
chr4 (92-202)||(43154788-43154898)
chr4 (88-204)||(5545279-5545395)
chr4 (100-238)||(10575488-10575625)
chr4 (110-204)||(45172643-45172736)
chr4 (88-169)||(21169007-21169088)
chr4 (88-202)||(22423634-22423748)
chr4 (88-202)||(34982174-34982288)
chr4 (110-204)||(55134180-55134274)
chr4 (88-202)||(24449074-24449190)
chr4 (105-175)||(26329059-26329129)
[»] chr6 (25 HSPs)
chr6 (1-238)||(57548-57788)
chr6 (88-238)||(29149353-29149503)
chr6 (41-238)||(3514814-3515011)
chr6 (88-238)||(12614680-12614830)
chr6 (1-238)||(2618216-2618455)
chr6 (92-238)||(6754160-6754306)
chr6 (88-238)||(7525130-7525280)
chr6 (88-233)||(628064-628209)
chr6 (41-238)||(6360664-6360859)
chr6 (41-238)||(29401043-29401240)
chr6 (92-202)||(3748568-3748678)
chr6 (88-204)||(30915364-30915480)
chr6 (94-204)||(1690631-1690741)
chr6 (88-204)||(31860953-31861067)
chr6 (105-204)||(350381-350481)
chr6 (112-204)||(14893415-14893507)
chr6 (120-238)||(22503728-22503843)
chr6 (140-202)||(21946109-21946171)
chr6 (110-204)||(29308465-29308559)
chr6 (88-204)||(1093039-1093154)
chr6 (94-204)||(19231569-19231678)
chr6 (88-139)||(24455169-24455220)
chr6 (163-204)||(6294279-6294320)
chr6 (1-33)||(24455080-24455112)
chr6 (124-175)||(31234899-31234948)
[»] chr8 (27 HSPs)
chr8 (41-238)||(7857988-7858185)
chr8 (41-238)||(13585202-13585399)
chr8 (41-235)||(43968037-43968231)
chr8 (88-238)||(44665010-44665160)
chr8 (41-236)||(18420575-18420770)
chr8 (92-238)||(3471554-3471700)
chr8 (88-238)||(43926287-43926437)
chr8 (90-236)||(27074526-27074672)
chr8 (88-238)||(42951729-42951883)
chr8 (92-238)||(18112070-18112217)
chr8 (88-202)||(32098178-32098292)
chr8 (88-204)||(34523949-34524065)
chr8 (88-202)||(3628747-3628861)
chr8 (88-204)||(5869320-5869434)
chr8 (110-202)||(23567274-23567366)
chr8 (136-238)||(1004056-1004160)
chr8 (124-204)||(12531545-12531625)
chr8 (124-204)||(29372343-29372423)
chr8 (111-202)||(39697938-39698029)
chr8 (88-204)||(30915285-30915402)
chr8 (88-202)||(35874874-35874990)
chr8 (124-202)||(2545921-2545998)
chr8 (1-31)||(32098351-32098381)
chr8 (104-204)||(33452757-33452858)
chr8 (1-33)||(3471454-3471486)
chr8 (1-33)||(29372229-29372261)
chr8 (1-33)||(42951946-42951978)
[»] chr2 (36 HSPs)
chr2 (92-238)||(26151711-26151857)
chr2 (41-238)||(19367383-19367580)
chr2 (88-238)||(42411522-42411672)
chr2 (41-238)||(18676274-18676472)
chr2 (41-238)||(25222226-25222423)
chr2 (88-204)||(2063755-2063871)
chr2 (88-240)||(6530609-6530761)
chr2 (88-236)||(13020373-13020521)
chr2 (88-231)||(45042339-45042485)
chr2 (88-238)||(34061820-34061970)
chr2 (92-238)||(45618931-45619076)
chr2 (88-238)||(7993582-7993733)
chr2 (88-238)||(41096501-41096652)
chr2 (94-234)||(4855948-4856089)
chr2 (41-238)||(42759720-42759909)
chr2 (88-234)||(12269375-12269520)
chr2 (88-202)||(1418860-1418973)
chr2 (110-204)||(18172938-18173032)
chr2 (88-238)||(36481354-36481494)
chr2 (88-202)||(39081348-39081462)
chr2 (110-202)||(15457472-15457564)
chr2 (88-204)||(36059903-36060019)
chr2 (88-202)||(21747230-21747344)
chr2 (110-204)||(38985707-38985801)
chr2 (88-204)||(18916052-18916168)
chr2 (88-202)||(29480637-29480751)
chr2 (88-204)||(27302526-27302642)
chr2 (88-202)||(13997264-13997378)
chr2 (110-202)||(18482506-18482599)
chr2 (105-204)||(1226264-1226364)
chr2 (125-200)||(31273168-31273242)
chr2 (140-202)||(38599404-38599466)
chr2 (90-151)||(13001597-13001658)
chr2 (110-204)||(17117643-17117729)
chr2 (88-136)||(32186216-32186264)
chr2 (1-33)||(36481266-36481298)
[»] chr1 (40 HSPs)
chr1 (1-236)||(50552354-50552593)
chr1 (88-238)||(10109670-10109820)
chr1 (41-238)||(12884102-12884298)
chr1 (88-238)||(48722334-48722484)
chr1 (88-238)||(30899606-30899758)
chr1 (88-236)||(6150671-6150819)
chr1 (88-234)||(17487251-17487397)
chr1 (41-234)||(51110069-51110262)
chr1 (1-238)||(52055410-52055652)
chr1 (88-238)||(14084664-14084815)
chr1 (88-238)||(20905251-20905401)
chr1 (88-238)||(29208062-29208212)
chr1 (132-238)||(1-107)
chr1 (88-238)||(27703494-27703643)
chr1 (88-204)||(25930554-25930670)
chr1 (98-234)||(28885639-28885775)
chr1 (41-238)||(18127901-18128098)
chr1 (41-236)||(33124596-33124793)
chr1 (88-204)||(5560433-5560549)
chr1 (88-204)||(12971356-12971472)
chr1 (88-204)||(6333514-6333629)
chr1 (88-204)||(50371084-50371200)
chr1 (88-236)||(30004874-30005015)
chr1 (92-197)||(44836726-44836831)
chr1 (88-202)||(37873762-37873876)
chr1 (88-202)||(15441240-15441355)
chr1 (41-144)||(28189301-28189403)
chr1 (112-202)||(17674354-17674444)
chr1 (88-202)||(42740060-42740174)
chr1 (100-195)||(3907434-3907528)
chr1 (88-202)||(22386837-22386951)
chr1 (129-202)||(13120866-13120939)
chr1 (110-202)||(24556778-24556870)
chr1 (112-170)||(9777387-9777445)
chr1 (1-33)||(27703703-27703735)
chr1 (90-160)||(26486407-26486477)
chr1 (88-198)||(38263814-38263924)
chr1 (1-33)||(12971280-12971312)
chr1 (1-33)||(17487457-17487489)
chr1 (1-33)||(28189253-28189285)
[»] chr7 (33 HSPs)
chr7 (1-238)||(33909927-33910164)
chr7 (88-238)||(6380048-6380198)
chr7 (41-236)||(33419083-33419279)
chr7 (41-235)||(11672487-11672683)
chr7 (88-238)||(44893993-44894143)
chr7 (41-236)||(46221669-46221864)
chr7 (88-202)||(18015582-18015696)
chr7 (92-238)||(36796335-36796482)
chr7 (41-204)||(8358292-8358455)
chr7 (88-204)||(7636324-7636440)
chr7 (125-238)||(12251252-12251365)
chr7 (41-236)||(42161088-42161283)
chr7 (88-233)||(4099919-4100063)
chr7 (88-202)||(32956725-32956839)
chr7 (88-204)||(26282540-26282656)
chr7 (88-204)||(26633313-26633429)
chr7 (88-204)||(40001694-40001810)
chr7 (91-202)||(36438351-36438462)
chr7 (112-204)||(773882-773974)
chr7 (88-202)||(18895397-18895511)
chr7 (90-199)||(40737994-40738103)
chr7 (103-204)||(41908143-41908244)
chr7 (88-204)||(1365959-1366075)
chr7 (90-202)||(9479079-9479191)
chr7 (88-192)||(25061853-25061957)
chr7 (97-204)||(30739082-30739189)
chr7 (88-238)||(40841210-40841360)
chr7 (107-204)||(44876153-44876248)
chr7 (127-204)||(3799758-3799835)
chr7 (141-200)||(42312012-42312071)
chr7 (163-204)||(25610091-25610132)
chr7 (90-202)||(7366639-7366751)
chr7 (113-200)||(41852302-41852387)
[»] scaffold0126 (2 HSPs)
scaffold0126 (88-238)||(16660-16810)
scaffold0126 (1-33)||(16565-16597)
[»] chr5 (34 HSPs)
chr5 (90-238)||(13474582-13474730)
chr5 (88-234)||(19099282-19099428)
chr5 (88-238)||(13423814-13423964)
chr5 (41-238)||(13656111-13656310)
chr5 (88-236)||(26377739-26377888)
chr5 (88-236)||(36718532-36718681)
chr5 (103-238)||(12661274-12661409)
chr5 (88-204)||(10591271-10591387)
chr5 (110-204)||(29156162-29156256)
chr5 (88-202)||(138094-138208)
chr5 (88-193)||(27351299-27351404)
chr5 (88-204)||(43511568-43511684)
chr5 (128-204)||(17513934-17514010)
chr5 (110-204)||(20975957-20976051)
chr5 (92-161)||(26311960-26312029)
chr5 (110-204)||(42291879-42291973)
chr5 (90-195)||(23069172-23069277)
chr5 (88-204)||(4734580-4734696)
chr5 (110-204)||(5829357-5829449)
chr5 (41-146)||(8398884-8398989)
chr5 (88-204)||(40956263-40956379)
chr5 (110-185)||(8379538-8379613)
chr5 (88-198)||(10033496-10033607)
chr5 (139-202)||(18873458-18873521)
chr5 (142-202)||(7390400-7390460)
chr5 (88-202)||(17325794-17325909)
chr5 (141-204)||(33281677-33281740)
chr5 (126-204)||(3349727-3349805)
chr5 (110-202)||(16515496-16515588)
chr5 (112-175)||(931354-931417)
chr5 (92-204)||(40779146-40779257)
chr5 (181-237)||(26312027-26312083)
chr5 (1-33)||(19099487-19099519)
chr5 (1-33)||(40956168-40956200)
[»] scaffold0181 (1 HSPs)
scaffold0181 (88-236)||(17098-17246)
[»] scaffold0100 (1 HSPs)
scaffold0100 (88-235)||(46141-46287)
[»] scaffold0564 (1 HSPs)
scaffold0564 (88-238)||(1023-1161)
[»] scaffold0606 (1 HSPs)
scaffold0606 (124-198)||(8399-8473)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29387958 - 29387718
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          |||||||||| |||||||||||| | ||||||||||||         ||||||||||    
T  29387958 aaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttgagtttttttttagactctagt 29387859  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  29387858 tctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatcaca 29387759  T
Q  198 acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||       |||||||||||||||||||||||||||    
T  29387758 acaatcatttttttcttcgcataaaccattcgttttaccct 29387718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 8364075 - 8364238
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| | ||||||||||||         ||||||| ||||| ||||||||||||||||  |||||||||||||||||||||    
T  8364075 tatgttatatccttttctttctttagtacacgtttgagtttttttctagactcttgttctcctttttgtacataaatcggatcctatcaaaccaccccta 8364174  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8364175 atttgtataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatca 8364238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 21784898 - 21784747
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  21784898 agactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagttaatttggaaagctatttcattga 21784799  T
Q  188 aagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||        |||||||||||||||||||||||||||    
T  21784798 aagaatcacaacaatcattttttttcttcgcataaaccattcgttttaccct 21784747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 28132896 - 28132702
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||| ||||||         ||||||||||||| ||||||||||||||||  |||||||||||| ||||| ||    
T  28132896 tatgttatatcattttctttctttagtacacatttgagattttttctagactctagttctcctttttgtacataaatcagatcctatcaaatcaccctta 28132797  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  28132796 atttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatca-ttttttcttcgcataaaccattcgttttacc 28132702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 24252571 - 24252720
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||     
T  24252571 agactctagttcttctttttgtacataatca-gatcctatcaaaccacccttaatttgtataatcacttaatcagtcaatttggaaagttatttcagtgc 24252669  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  24252670 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 24252720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 52655237 - 52655087
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  52655237 agactctagttctcctttttgtatataaatcggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagctatttcattga 52655138  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       | |||||||||||||||||||||||||    
T  52655137 aagaatcacaacaatcatttttttcctcgcataaaccattcgttttaccct 52655087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 23164774 - 23164538
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnntat--gttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagtt 98  Q
    |||||| |||||||||||||||| |||||||||       |||  |||||||  |||||||| |||| ||||||||||||         |||||||||||    
T  23164774 aaattatgtctaatacccacccctcacttaaataaaaaaatatatgttatatccttttcttttttcagtacacgtttgagttttttct-agactctagtt 23164676  T
Q  99 cttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaa 198  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||||||||||||    
T  23164675 ctcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtctatttcattgaaagaatcacaa 23164576  T
Q  199 caatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||| |       |||||||||||||||||||||||||    
T  23164575 caataatttttttcttcgcataaaccattcgttttacc 23164538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 46791901 - 46791671
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          |||||||||  |||||||||||| | ||||||||||||         ||||||||||    
T  46791901 aaattaaatctaatacccaccccccacttaaataaaaaatatatatgttataacattttctttctttagtacacgtttgagtttttttctagactctagt 46791802  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    ||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  46791801 tctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaaactatttcattgcaagaatcaca 46791702  T
Q  198 acaatcannnnnnncttcgcataaaccattc 228  Q
    |||||||       |||||||||||||||||    
T  46791701 acaatcatttttttcttcgcataaaccattc 46791671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 27729930 - 27729733
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||| | | ||||||||||||         ||||||||||||| ||||||||||||||||  |||| ||||||||||||||||    
T  27729930 tatgttatatcattttctttcattagtacacgtttgagtttttttgtagactctagttctcctttttgtacataaatcggatcttatcaaaccaccccta 27729831  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||| |||||| |||||||||||||  |||| || |||||||||||||||||||       |||||||||||||||||||||||||||    
T  27729830 atttgtataatcacataatcaatcaatttggaaagcaatttgatcgaaagaatcacaacaatcattattttcttcgcataaaccattcgttttaccct 27729733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 41707216 - 41707053
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  41707216 tatgttatatctttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccaccccta 41707117  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  41707116 atttgcataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 41707053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 51939670 - 51939519
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  51939670 agactctagttctcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 51939571  T
Q  188 aagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||        |||| ||||||||||||||||||||||    
T  51939570 aagaatcacaacaatcattttttttcttcacataaaccattcgttttaccct 51939519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 54430505 - 54430652
Alignment:
Q  91 ctctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaag 190  Q
    |||||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  54430505 ctctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttatttcattaaaag 54430604  T
Q  191 aatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||  |||||||||       |||||||||||||||||||||||||||    
T  54430605 aattgcaacaatcatttttttcttcgcataaaccattcgttttaccct 54430652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 25599200 - 25599051
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||   ||||||||||    
T  25599200 agactctagttctcctttttgtacataaatctgattctatcaaaccacctctaatttatataatcacttaatcagtcaatttgaaaaactatttcattga 25599101  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  25599100 aagaatcacaacaatca-tgttttcttcgcataaaccattcgttttaccct 25599051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 18408095 - 18408291
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||| |||||||  |||||||||||||||  |||||||||||||||||||||    
T  18408095 tatgttatatcattttctttctttagtacacgtttgagttttttct-agactttagttctcatttttgtacataaatcggatcctatcaaaccaccccta 18408193  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||| ||||  | | |||||||||||||||||||||||        ||||||||||| ||||||||||||||    
T  18408194 atttgtataatcacttaatcagtcaatttgaaaagctaatccattgaaagaatcacaacaatcattttttttttcgcataaacaattcgttttaccct 18408291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 23067887 - 23067688
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnn-agactctagttcttctttttgtacataaatatgatcctatcaaaccacccct 139  Q
    |||||||||| |||||||||||| | ||||||||||||          ||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  23067887 tatgttatatcattttctttctttagtacacgtttgagttttttttctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccct 23067788  T
Q  140 aatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca-acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||        ||||||||||||||| ||||||||||    
T  23067787 aatttgtataatcacttcaccagtcaatttgaaaagttatttcatttaaagaatcacacacaatcattttttaattcgcataaaccatttgttttaccct 23067688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 13401411 - 13401525
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||||| | |||||||||||||||||||||||||||||||| ||||  ||||||||| ||    
T  13401411 actctagttctcctttttgtacatacattcgatcctatcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctatttcattggaa 13401510  T
Q  190 gaatcacaacaatca 204  Q
    |||||||||||||||    
T  13401511 gaatcacaacaatca 13401525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 42009376 - 42009262
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| |||| || |||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  42009376 agactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcattga 42009277  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  42009276 aagaatcacaacaat 42009262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 7767013 - 7767127
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||| |||||| |||| || |||||||| |||| ||||||||| |||   ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  7767013 agactccagttctactttctggacataaatttgatgctatcaaacaaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 7767112  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  7767113 aagaatcacaacaat 7767127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 1255158 - 1255057
Alignment:
Q  94 tagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaat 193  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||  ||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||    
T  1255158 tagttcttctttttggacataaatctgatgctatcaaacgacctttaatttgtataatgacttaatcggtcaatttagaaagttatttcattgaaagaat 1255059  T
Q  194 ca 195  Q
    ||    
T  1255058 ca 1255057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 21596285 - 21596401
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||| |||| || ||||||||  ||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||  ||||||||      
T  21596285 agactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatttgtataatcacttaatcagtcgatttggaaagctatttcattac 21596384  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  21596385 aagaatcacaacaatca 21596401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 36538298 - 36538186
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    ||||||||| | |||| || |||||||  |||| |||||||||||||   ||||||||||||||||||||||||||||||| |||   ||||||||||||    
T  36538298 actctagttatactttatggacataaacttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaa 36538199  T
Q  190 gaatcacaacaat 202  Q
    |||||||||||||    
T  36538198 gaatcacaacaat 36538186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 27303137 - 27303251
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||| |||| || |||||||| |||| | || ||||||||   |||||||||||||||||||||| |||||||| ||||  ||||||||||    
T  27303137 agactctacttctactttatggacataaatttgatgccatgaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattga 27303236  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  27303237 aagaatcacaacaat 27303251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 48627121 - 48627027
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| |||| |||||| |||||| | ||||||||||||||||| ||||||||||||| |||   |||||||||||||||||||||||||||    
T  48627121 acataaatctgatactatcagaccaccgccaatttgtataatcacttgatcagtcaatttgaaaatctatttcattgaaagaatcacaacaatca 48627027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 6715399 - 6715538
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||||||||  |||||||||          |||||||||||| |||||| ||||||||||    
T  6715399 agactctagttctcctttttgtatataaatcggatcctatcaaaccacctataatttgta----------atcagtcaattttgaaagttatttcattga 6715488  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||| ||||||||        ||||||||||||||||||||||||||    
T  6715489 aagaatcataacaatcattttttt-ttcgcataaaccattcgttttaccct 6715538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 19965992 - 19965884
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    |||||| |||| ||||||| |||||||| |||| ||||||||||||  | |||||||||||||||||||| ||| || ||| ||||  |||||||| |||    
T  19965992 actctaattctcctttttggacataaatctgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcattaaaa 19965893  T
Q  190 gaatcacaa 198  Q
    |||||||||    
T  19965892 gaatcacaa 19965884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 46904714 - 46904806
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||| || |||| |||||||||||||   ||||||||||||||||||||||||||||||  |||   |||||||||||||||||||||||||    
T  46904714 acatagatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaat 46904806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 40152244 - 40152127
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||||||||||  ||||| || |||| ||| |||| || ||| ||||||||||||||||||||| ||||||||| |||   |||||||| |    
T  40152244 agactctaattcttctttttagacatagatctgatgctaccaaatcatccccaatttgtataatcacttaatcggtcaatttgaaaaactatttcattaa 40152145  T
Q  188 aa-gaatcacaacaatca 204  Q
    || |||||||||||||||    
T  40152144 aacgaatcacaacaatca 40152127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 50677391 - 50677314
Alignment:
Q  125 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||||||||||   ||||||||||||||||||||||||||||||| |||   |||||||||||| ||||||||||||    
T  50677391 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaacaatcacaacaat 50677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 20762052 - 20762149
Alignment:
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||| |||||| |||||||||    |||||||||||||||||| ||||||||       | |||||||||||||||||||||||||    
T  20762052 atttgtataatcacttgatcagttaatttggaagtctatttcattgaaagaatcataacaatcatttttttcgtcgcataaaccattcgttttaccct 20762149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 43905957 - 43905862
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttca 183  Q
    ||||| ||||||| || | || |||||||| || | ||||||||| ||||  |||||||||||||||| |||||||||||||| ||||| ||||||    
T  43905957 agactttagttctcctatctggacataaatctggtactatcaaactaccctcaatttgtataatcactcaatcagtcaatttgaaaagttatttca 43905862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 1649923 - 1649829
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | |||||||| |||||| |||||||||||||||||||||| |||||||| |||   |||||| ||||||  || |||||||||    
T  1649923 acataaatctggtgctatcaaatcacccccaatttgtataatcacttaatcattcaatttgaaaatctatttcactgaaagcttcgcaacaatca 1649829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 4207465 - 4207357
Alignment:
Q  89 gactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaa 188  Q
    |||||||||||| ||||||| |||  |||   || ||||||||||| ||  |||||||||||||||||||||| |||||||||||||  |||||    ||    
T  4207465 gactctagttctcctttttggacaagaattcaatgctatcaaaccatcc--aatttgtataatcacttaatcattcaatttggaaagatatttc----aa 4207372  T
Q  189 agaatcacaacaatc 203  Q
    |||||||||||||||    
T  4207371 agaatcacaacaatc 4207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 51146892 - 51147001
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||  ||||||| |||||||| |||| |||| ||||||||   |||||| ||| |||||||||||||||||||  |||   |||| |||||||||    
T  51146892 tctagttccactttttggacataaatttgatgctattaaaccaccatcaatttgaata-tcacttaatcagtcaatttaaaaaactattttattgaaaga 51146990  T
Q  192 atcacaacaat 202  Q
    |||||||||||    
T  51146991 atcacaacaat 51147001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 15987207 - 15987299
Alignment:
Q  145 gtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||||||| ||||| ||||        ||||||||||||||||||||| ||||    
T  15987207 gtataatcacttaatcattcaatttcgaaagttatttcattaaaagaattacaactatcatttattt-ttcgcataaaccattcgtttttccct 15987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51939759 - 51939727
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  51939759 aaattaaatctaatacccaccccccacttaaat 51939727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 54430414 - 54430446
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||||||||||||||||| |||||||||||    
T  54430414 aaattaagtctaatacccacctcccacttaaat 54430446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 23426365 - 23426130
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnntatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttct 100  Q
    ||||||| |||||||||||||||| ||||||||       ||||||||||| ||||||||||| | || |||||||||         |||||||||||||    
T  23426365 aaattaaatctaatacccaccccctacttaaatatata--tatgttatatacttttctttctttagtatacgtttgagtttttttctagactctagttct 23426268  T
Q  101 tctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaaca 200  Q
     ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23426267 cctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaaca 23426168  T
Q  201 atcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||       |||||||||||||||||||||||||||    
T  23426167 atcatttttttcttcgcataaaccattcgttttaccct 23426130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 32130993 - 32130754
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          |||||||||| |||||||||||| | ||| ||||||||         |||| |||||    
T  32130993 aaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacccgtttgagttttttct-agacactagt 32130895  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||    
T  32130894 tcttctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcaca 32130795  T
Q  198 acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||       |||||||||||||||||||||||||||    
T  32130794 acaatcatttttttcttcgcataaaccattcgttttaccct 32130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 27632301 - 27632498
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||||||||||||||||| ||||||||||||         ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27632301 tatgttatataattttctttcttcagtacacgtttgagtttttttctagattctagttctcctttttgtacataaatttgatcctatcaaaccaccccta 27632400  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||||| |||||||||| ||||  | |||||||||||||||||| ||||||       ||||||||||| |||||| ||||||||    
T  27632401 atttgtataatcacttaattagtcaatttgaaaagctacttcattgaaagaatcacatcaatcatttttttcttcgcataaatcattcgctttaccct 27632498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 53011616 - 53011812
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         | |||||| |||| ||||||||||||||||  |||||||||||||||||||||    
T  53011616 tatgttatatcattttctttctttagtacacgtttgagttttttctaa-actctaattctcctttttgtacataaatcagatcctatcaaaccaccccta 53011714  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||       ||||||||||||||||| |||||||||    
T  53011715 atttgtataatcacttaatcagtcaatttggaaagctatttcattaaaagaatcacaacaatcatttttttcttcgcataaaccattcattttaccct 53011812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11681947 - 11681706
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          ||| ||||||  ||||||||||| | ||||||||||||         ||||||||||    
T  11681947 aaattaaatctaatacccaccccccacttaaataaaaaatatatatattatattcttttctttctttagtacacgtttgagtttttttctagactctagt 11681848  T
Q  98 tcttctttttgt-acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcac 196  Q
    ||| |||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11681847 tctccttttttttacataaatcggatcctatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11681748  T
Q  197 aacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||       ||||| ||||||||| |||||||||||    
T  11681747 aacaatcatttttttcttcgaataaaccatccgttttaccct 11681706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11690226 - 11689985
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          ||| ||||||  ||||||||||| | ||||||||||||         ||||||||||    
T  11690226 aaattaaatctaatacccaccccccacttaaataaaaaatatatatattatattcttttctttctttagtacacgtttgagtttttttctagactctagt 11690127  T
Q  98 tcttctttttgt-acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcac 196  Q
    ||| |||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11690126 tctccttttttttacataaatcggatcctatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11690027  T
Q  197 aacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||       ||||| ||||||||| |||||||||||    
T  11690026 aacaatcatttttttcttcgaataaaccatccgttttaccct 11689985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 19661329 - 19661479
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  19661329 agactctagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattga 19661428  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||| ||||||||||        ||| |||||||||||||||||||||||    
T  19661429 aagaaacacaacaatcctttttttctttgcataaaccattcgttttaccct 19661479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28463792 - 28463552
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          ||||||||||  ||||||||||| | || |||||||||         ||||||||||    
T  28463792 aaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatccttttctttctttagtaaacgtttgagtttttttctagactctagt 28463693  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    ||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||  |||||||||||| |||||||    
T  28463692 tctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtataatcacttaatcaatcaagttgaaaagctatttcattgaaaaaatcaca 28463593  T
Q  198 acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||       |||||||||||||||||||||| ||||    
T  28463592 acaatcatttttttcttcgcataaaccattcgttttgccct 28463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 41038215 - 41038350
Alignment:
Q  103 tttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  41038215 tttttgtacataaatcgaatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaat 41038314  T
Q  203 cannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||       |||||||||||||||||||||||||||    
T  41038315 catttttttcttcgcataaaccattcgttttaccct 41038350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 23256544 - 23256693
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  |||||| |||    
T  23256544 agactccagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataaccacttaatcagtcaatttagaaagctatttcaatga 23256643  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||| ||||||||||||||||||||||    
T  23256644 aagaatcacaacaatca-ttttttcttcccataaaccattcgttttaccct 23256693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29221827 - 29221585
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat-----nnnnnnntatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactcta 95  Q
    ||||||||| |||||||||||||||||||||||            ||||||||||  ||||||||||||| | ||||||||||         ||||||||    
T  29221827 aaattaagtttaatacccaccccccacttaaataaaaaaaatatatatgttatatccttttctttcttcatttcacgtttgagtttttttctagactcta 29221728  T
Q  96 gttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatca 195  Q
     ||||  ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| | ||||||||||||    ||||||||||| ||||||    
T  29221727 attctcgtttttgtacataaatctgatcctatcaaaccactcttaatttgtataatcacttaaacggtcaatttggaagtctatttcattgaaggaatca 29221628  T
Q  196 caacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||       |||||||||||||||||||||||||||    
T  29221627 caacaatcatttttttcttcgcataaaccattcgttttaccct 29221585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 29579830 - 29579978
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||| ||| ||||  |||||| |||    
T  29579830 agactctagttctattttttgtacataaatctgatcctatcaaaccacccataatttgtataattaattaatcagtcaaattgaaaagctatttcaatga 29579929  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||       |||||||||||| ||||||||||||    
T  29579930 aagaatcacaacaatcatttttttcttcgcataaacaattcgttttacc 29579978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 44478004 - 44478140
Alignment:
Q  103 tttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  44478004 tttttgtacataaatcagatcctatcaaaccacccataatttgtataatcactaaatcagtcaatttggaaagctatttcattgaaagaatcacaacaat 44478103  T
Q  203 ca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||        |||||||||||| ||||||||||||||    
T  44478104 cattttttttcttcgcataaactattcgttttaccct 44478140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 35654094 - 35653980
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || ||||||||||||| |||||||||||||   |||||||||||||||||||||| |||||||| ||||  ||||||||||    
T  35654094 agactctagttctactttctggacataaatatgatgctatcaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattga 35653995  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  35653994 aagaatcacaacaat 35653980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 21791661 - 21791545
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| | |||||||||||   ||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  21791661 agactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtcaatttgaaaagttatttcattga 21791562  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  21791561 aagaatcacaacaatca 21791545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 16072498 - 16072698
Alignment:
Q  42 atgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaa 141  Q
    ||||||||| |||||||||||||  ||||||||||||         |  |||||| ||| |||||||||||||||| |||||||||||||||| ||||||    
T  16072498 atgttatatcattttctttcttcggtacacgtttgagtttttttctaagctctagatctcctttttgtacataaatttgatcctatcaaaccatccctaa 16072597  T
Q  142 tttgtataatcacttaatcagtcaatttggaaagtgatttcatt----gaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccc 237  Q
    |||||||||||| |||||||||||||||| |||   |||||| |    |||||||||||||||||||       |||||||||||| ||| |||||||||    
T  16072598 tttgtataatcatttaatcagtcaatttgaaaaactatttcaatgaaagaaagaatcacaacaatcatttttttcttcgcataaactatttgttttaccc 16072697  T
Q  238 t 238  Q
    |    
T  16072698 t 16072698  T

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Target: chr4; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 43154898 - 43154788
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| ||||||| |||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||  ||||| |||||||| |||||    
T  43154898 tctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcattaaaaga 43154799  T
Q  192 atcacaacaat 202  Q
    |||||||||||    
T  43154798 atcacaacaat 43154788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 5545279 - 5545395
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| ||||||| | || |||||||| |||| | ||||||||||| | ||||||||||||||||||||| ||||||||||||||  |||||||| |    
T  5545279 agactctaattcttctgtctggacataaatttgatgccatcaaaccaccaccaatttgtataatcacttaatcggtcaatttggaaagctatttcattaa 5545378  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  5545379 aagaatcacaacaatca 5545395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 10575625 - 10575488
Alignment:
Q  100 ttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaac 199  Q
    ||||||||  |||||||| | || ||||||||||||||  || ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  10575625 ttcttttttaacataaattttatgctatcaaaccaccctcaacttgtataatcacttaatcagtcaatttagaaagttatttcattgaaataatcacaac 10575526  T
Q  200 aatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||        ||||||||||||||||||||| ||||    
T  10575525 aatcatttcttt-ttcgcataaaccattcgttttcccct 10575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 45172736 - 45172643
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||    
T  45172736 acataaatctggtactatcaaaccaccc-taatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatca 45172643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 21169007 - 21169088
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaattt 169  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  21169007 agactctagttctcctttttgtacataaatcggatcctatcaaatcacccctaatttgtataatcaattaatgagtcaattt 21169088  T

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Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 22423634 - 22423748
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| |||||||||||||   ||||||||| |||||||||||| |||||||| |||   |||| |||||    
T  22423634 agactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtatgatcacttaatcaatcaatttgaaaaactattttattga 22423733  T
Q  188 aagaatcacaacaat 202  Q
    |||||||| ||||||    
T  22423734 aagaatcaaaacaat 22423748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 34982174 - 34982288
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||| |||| | || |||||||| || | ||| ||||||| ||| ||||||||||||||||||||||||||||| | |||   ||||| ||||    
T  34982174 agactttagtttttctatctggacataaatctggtactaacaaaccatccccaatttgtataatcacttaatcagtcaattggaaaaactatttcgttga 34982273  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  34982274 aagaatcacaacaat 34982288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 55134180 - 55134274
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||  | |||| ||||||| |||||||||||||||||| ||||  ||||||| |||||||||||||||||||    
T  55134180 acataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagctatttcatagaaagaatcacaacaatca 55134274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 24449074 - 24449190
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccct--aatttgtataatcacttaatcagtcaatttggaaagtgatttcatt 185  Q
    ||||||||||||| |||| || | |||||| |||| ||||||||||||      ||||||||||||||||||||| ||||||||| |||   ||||| |     
T  24449074 agactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggtcaatttgaaaaactatttctta 24449173  T
Q  186 gaaagaatcacaacaat 202  Q
    ||||||| |||||||||    
T  24449174 gaaagaaccacaacaat 24449190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 26329129 - 26329059
Alignment:
Q  105 tttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaag 175  Q
    |||| |||||||| |||| ||| ||||||||| | ||||| |||||||| | ||||||||||||| |||||    
T  26329129 tttggacataaatctgatgctaccaaaccacctccaatttatataatcattcaatcagtcaatttagaaag 26329059  T

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Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 57548 - 57788
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    |||||||||||||||||||| ||||||||||||          |||||||||| |||||||||||||  ||||||||||||         | ||||||||    
T  57548 aaattaagtctaatacccactccccacttaaataaaagatatatatgttatatcattttctttcttcggtacacgtttgagtttttttttaaactctagt 57647  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||    
T  57648 tctcctttttgtacataaatctgatcctatcaaaccacccataatttgtataatcacttaatcagtcaatttagaaagctatttcattcaaagaatcaca 57747  T
Q  198 acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||       |||||||||||||||||||||||||||    
T  57748 acaatcatttttttcttcgcataaaccattcgttttaccct 57788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 29149353 - 29149503
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29149353 agactctagttctcctttttgtacataaatcggatcctatcaaaccacacctaatttgtataatcacttaatcagtcaatttggaaagttagttcattga 29149452  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  29149453 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 29149503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 3515011 - 3514814
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         | ||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  3515011 tatgttatatcattttctttctttagtacacgtttgagtttttttctaaactctagttctcctttttgtacataaatcagatcctatcaaaccaccccta 3514912  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||| |||||| |||||||||||||  || ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  3514911 atttgtataatcacgtaatcattcaatttggaaagctatatcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 3514814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 12614830 - 12614680
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  12614830 agactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 12614731  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       ||||||||||||||| |||||||||||    
T  12614730 aagaatcacaacaatcatttttttcttcgcataaaccatccgttttaccct 12614680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2618216 - 2618455
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn---tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagt 97  Q
    ||||||| |||||||||||||||||||||||||          |||||||||| |||||||||||| | ||||||||||||         ||||| ||||    
T  2618216 aaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttgagttttttct-agactttagt 2618314  T
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    |||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  2618315 tctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcaca 2618414  T
Q  198 acaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||| |       |||||||||||||||||||||||||||    
T  2618415 acaattatttttttcttcgcataaaccattcgttttaccct 2618455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 6754160 - 6754306
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    |||||||||  |||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  6754160 tctagttctcttttttgtacataaatcggatcctatcaaaccatccctaatttgtatagtcacttaatcagtcaatttggaaagctatttcattgaaaga 6754259  T
Q  192 atcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||       |||||||||||||||||||||||||||    
T  6754260 atcacaacaatcatttttttcttcgcataaaccattcgttttaccct 6754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 7525280 - 7525130
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| | ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  7525280 agactctagttctccattttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatcagtcaatttggaaagttattttattga 7525181  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||| |||  |||||||||    
T  7525180 aagaatcacaacaatcatttttttcttcgcataaacaatttattttaccct 7525130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 628209 - 628064
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||  ||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  628209 agactctagttcacctttttgtacacaaatcagatcttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 628110  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgtttt 233  Q
    |||||||||||||||||       ||||||||||||||||||||||    
T  628109 aagaatcacaacaatcatttttttcttcgcataaaccattcgtttt 628064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 6360664 - 6360859
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         |||||||||||||  |||||| ||||||||  |||||||||||||||||| ||    
T  6360664 tatgttatatcattttctttctttagtacacgtttgagttttttct-agactctagttctcttttttgcacataaatcggatcctatcaaaccaccctta 6360762  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||       ||||| |||||||||||||||||||||    
T  6360763 atttgtataatcacttaatcagtcaatttgaaaagtta-ttcattgaaagaatcacaacaatcatttttttcttcgtataaaccattcgttttaccct 6360859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 29401043 - 29401240
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||| |||| |||||||||||| | ||||||||||||          |||||||||| |  |||||||||||||||   |||||||||||| |||||||    
T  29401043 tatgtcatatcattttctttctttagtacacgtttgagtttttttcttgactctagttttcatttttgtacataaatcgaatcctatcaaactaccccta 29401142  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||       ||||||||||||||||||| |||||||    
T  29401143 attagtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtcttaccct 29401240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 3748678 - 3748568
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| ||||||| |||||||| |||| |||||||||| ||   |||||||||||||||||||||| |||||||| ||||  ||||||||||||||    
T  3748678 tctagttctactttttggacataaatttgatgctatcaaaccgccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaaga 3748579  T
Q  192 atcacaacaat 202  Q
    |||||||||||    
T  3748578 atcacaacaat 3748568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 30915480 - 30915364
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| |||||||||| ||   |||||||||||| |||||||||||||||||| ||||  |||| |||||    
T  30915480 agactctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataattacttaatcagtcaatttgaaaagctatttaattga 30915381  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  30915380 aagaatcacaacaatca 30915364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 1690741 - 1690631
Alignment:
Q  94 tagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaat 193  Q
    ||||||| || |||| |||||||| || | ||||||||||||| | ||||||||||||||||| |||| |||||||| ||| | ||||||||||||||||    
T  1690741 tagttctcctatttggacataaatctggtactatcaaaccaccaccaatttgtataatcacttgatcaatcaatttgaaaatttatttcattgaaagaat 1690642  T
Q  194 cacaacaatca 204  Q
    |||||||||||    
T  1690641 cacaacaatca 1690631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 31860953 - 31861067
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||||| | || |||||||| || |  |||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||||||||    
T  31860953 agactttagttcttctatctggacataaatctggta-tatcaaaccacccc-aatttgtataattacttaatcagtcaatttgaaaagctatttcattga 31861050  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  31861051 aagaatcacaacaatca 31861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 350381 - 350481
Alignment:
Q  105 tttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttc-attgaaagaatcacaacaatc 203  Q
    |||| ||||||||||||| |||||||||||||   ||||| |||||||||| ||||||||||||| |||||  ||||| ||  |||||||||||||||||    
T  350381 tttggacataaatatgatgctatcaaaccaccatcaatttatataatcactcaatcagtcaatttcgaaagctatttcaataaaaagaatcacaacaatc 350480  T
Q  204 a 204  Q
    |    
T  350481 a 350481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 14893507 - 14893415
Alignment:
Q  112 ataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||| |||| ||||||||| || |  |||||||||||| |||||||||||||||||| |||   ||||| || ||||||||||||||||||    
T  14893507 ataaatctgatgctatcaaacaactctgaatttgtataattacttaatcagtcaatttgaaaaactatttcgttaaaagaatcacaacaatca 14893415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 22503728 - 22503843
Alignment:
Q  120 gatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcat 219  Q
    |||||||||||||||| | |||||   |||||||||||||||||||||||| |||   ||||| |||||||||| | ||||||||       ||||| ||    
T  22503728 gatcctatcaaaccactcataatt---ataatcacttaatcagtcaatttgaaaaactatttcgttgaaagaattaaaacaatcatttttttcttcgtat 22503824  T
Q  220 aaaccattcgttttaccct 238  Q
    ||||||||| |||||||||    
T  22503825 aaaccattcattttaccct 22503843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 21946109 - 21946171
Alignment:
Q  140 aatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||||||||||||||||||||||| ||||| ||||  ||||||||||||||| || ||||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctatttcattgaaagaaccataacaat 21946171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 29308559 - 29308465
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||  | |||| ||||||| |||||||||||||||||| |||   |||||||||||  ||||||||||||||    
T  29308559 acataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaaactatttcattgaagtaatcacaacaatca 29308465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 1093154 - 1093039
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||  | |||| ||||||| ||| |||||||||||||  ||||  |||||| |||    
T  1093154 agactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgactaaatcagtcaatttaaaaagctatttca-tga 1093056  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  1093055 aagaatcacaacaatca 1093039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 19231569 - 19231678
Alignment:
Q  94 tagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaat 193  Q
    ||||||| |||| || |||||||| || | ||||||||| |||   |||||||||| ||||||||||| |||||||| ||||  ||  |||||||| |||    
T  19231569 tagttctactttctggacataaatctggtgctatcaaactaccttcaatttgtata-tcacttaatcaatcaatttgaaaagctatgacattgaaaaaat 19231667  T
Q  194 cacaacaatca 204  Q
    |||||||||||    
T  19231668 cacaacaatca 19231678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 24455169 - 24455220
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccct 139  Q
    ||||||||||||| |||||| || ||||||  ||||||||||||||||||||    
T  24455169 agactctagttctcctttttatatataaatcggatcctatcaaaccacccct 24455220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 6294279 - 6294320
Alignment:
Q  163 tcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  6294279 tcaatttgaaaagcaatttcattgaaagaatcacaacaatca 6294320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24455080 - 24455112
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  24455080 aaattaaatctaatacccaccccccacttaaat 24455112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 31234899 - 31234948
Alignment:
Q  124 ctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaag 175  Q
    ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||    
T  31234899 ctatcaaaccatcc--aatttgtataatcacttaatcaatcaatttgaaaag 31234948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 7857988 - 7858185
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||||| ||||||| ||||||||  |||||||||||| ||||||||    
T  7857988 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgaacataaatcggatcctatcaaatcaccccta 7858087  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||       |||||||||||||||||||||||||||    
T  7858088 atttgtataatcacttaatcagtcaatttggaaagttaattcatttaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 7858185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 13585202 - 13585399
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||| |  |||||||||||||||  |||||||||||||||||||||    
T  13585202 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactctagttttcttttttgtacataaatcagatcctatcaaaccaccccta 13585301  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  13585302 atttgtataatcaattaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 13585399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 43968231 - 43968037
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  43968231 tatgttatatccttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccactccta 43968132  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttac 235  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  43968131 atttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttac 43968037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 44665160 - 44665010
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  44665160 agactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtatcatcacttaatcagtctatttggaaagttatttcattga 44665061  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  44665060 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 44665010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 18420770 - 18420575
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  |||||||||||||||| | ||    
T  18420770 tatgttatatcattttctttctttagtacacgtttgagtttttttccagactctagttctcctttttgtacataaatcagatcctatcaaaccacactta 18420671  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  18420670 atttgtataatcacttaatcagtcaatttgaaaagctgtttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacc 18420575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 3471554 - 3471700
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    |||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  3471554 tctagttctcatttttgtacataaatgtgattctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaaga 3471653  T
Q  192 atcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||       |||||||| |||||||| |||||||||    
T  3471654 atcacaacaatcatttttttcttcgcatgaaccattcattttaccct 3471700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 43926437 - 43926287
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||  ||||||||||    
T  43926437 agactctagttctactttttgtatataaatcggatcctatcaaaccacccataatttgtataattacttaatcagtcaatttgaaaagctatttcattga 43926338  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||| ||||||||    
T  43926337 aagaatcacaacaatcatttttttcttcgcataaaccattcgctttaccct 43926287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 27074526 - 27074672
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagt-gatttcattgaa 188  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||    
T  27074526 actctagtactcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaattt-aaaagtctatttcattgaa 27074624  T
Q  189 agaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    | ||||||||||||||       |||||||||||||||| ||||||||    
T  27074625 aaaatcacaacaatcatttttttcttcgcataaaccatttgttttacc 27074672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 42951883 - 42951729
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  42951883 agactctagttctcatttttgtacataaatcgaatcctatcaaaccactcctaatttgtataatcacttaatcagtcaatttgaaaagttattttattga 42951784  T
Q  188 aagaat----cacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||    |||||||||||       |||||||||||||||||||||||||||    
T  42951783 aagaatcacacacaacaatcatttttttcttcgcataaaccattcgttttaccct 42951729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 18112070 - 18112217
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    |||||||||  ||| |||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| |||||||||    
T  18112070 tctagttctcttttatgtacataaatcggatcatatcaaaccactcctaatttgtataatcacttaatcagtcaatttggaaaactattttattgaaaga 18112169  T
Q  192 atcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||        |||||||||||||||||||||||||||    
T  18112170 atcacaacaatcattttttttcttcgcataaaccattcgttttaccct 18112217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 32098292 - 32098178
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||| | ||||||| |||||||| |||| |||||||||||| | |||||||||| |||||||||||||||||||||||||   ||||||||||    
T  32098292 agactctagttatcctttttggacataaatttgatgctatcaaaccactcttaatttgtatgatcacttaatcagtcaatttggaaaactatttcattga 32098193  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  32098192 aagaatcacaacaat 32098178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 34524065 - 34523949
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  34524065 agactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 34523966  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  34523965 aagaatcacaacaatca 34523949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 3628861 - 3628747
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| | || ||  ||||||| |||| |||||||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  3628861 agactctagttctacattctggtcataaatttgatgctatcaaaccaccattaatttgtataatcacataatcagtcaatttgaaaagttatttcattga 3628762  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  3628761 aagaatcacaacaat 3628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 5869434 - 5869320
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| |||| ||||||||||| |||| ||||||||||||| | ||||| || |||||||||||||||||||||| ||||  ||||||||||    
T  5869434 agactttagttctcctttctgtacataaat-tgatactatcaaaccaccac-aatttttaaaatcacttaatcagtcaatttgaaaagctatttcattga 5869337  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  5869336 aagaatcacaacaatca 5869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 23567366 - 23567274
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||| ||    ||||||||||||| |||||||||||    
T  23567366 acataaatctgctactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaatactatttcattgaaagtatcacaacaat 23567274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 1004056 - 1004160
Alignment:
Q  136 ccctaatttgtataatcacttaatcagtcaatttg-gaaagtgatttcattgaaagaatcacaacaatca-nnnnnnncttcgcataaaccattcgtttt 233  Q
    |||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||||||||        | ||||||||||||||||||||    
T  1004056 ccctaatttgtataatcacttaatcagtcaatttgaaaaaattatttcattgaaagaatcacaacaatcattttttttcatcgcataaaccattcgtttt 1004155  T
Q  234 accct 238  Q
    |||||    
T  1004156 accct 1004160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 12531545 - 12531625
Alignment:
Q  124 ctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||||  |||   |||||||||||||||||||||||||||    
T  12531545 ctatcaaactacctccaatttgtataatcacttaatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatca 12531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 29372343 - 29372423
Alignment:
Q  124 ctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||| ||||  |||||||||||||| |||||||||||||||||||||| |||  ||||||||||| ||||||||||    
T  29372343 ctatcaaactacccacaatttgtataatcatttaatcagtcaatttggaaagttattcaattgaaagaatgacaacaatca 29372423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 39698029 - 39697938
Alignment:
Q  111 cataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||||| || | ||||||||||||| | ||||||||| |||| ||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  39698029 cataaatttggtactatcaaaccaccaccaatttgtatgatcatttaattagtcaatttgaaaagctatttcattgaaagaatcacaacaat 39697938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 30915402 - 30915285
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcatt-g 186  Q
    |||||||| |||| |||| || ||||| || |||| ||| |||||| || | ||| ||||||||||||||||||||||||||| ||||  ||||||||      
T  30915402 agactctaattctcctttctggacatagatctgatgctaccaaacctcctccaatatgtataatcacttaatcagtcaatttgaaaagctatttcattaa 30915303  T
Q  187 aaagaatcacaacaatca 204  Q
    ||||||||||||||||||    
T  30915302 aaagaatcacaacaatca 30915285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 35874874 - 35874990
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccct--aatttgtataatcacttaatcagtcaatttggaaagtgatttcatt 185  Q
    ||||||||||||| |||| || | |||||| |||| ||||||||||||      ||||||||||||||||||||| ||||||||| |||   ||||| |     
T  35874874 agactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggtcaatttgaaaaactatttctta 35874973  T
Q  186 gaaagaatcacaacaat 202  Q
    ||||||| |||||||||    
T  35874974 gaaagaaccacaacaat 35874990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 2545998 - 2545921
Alignment:
Q  124 ctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| |||||| ||||  |||||||||||||||| |||| |||| |||| ||||||||||||  |||| ||||||    
T  2545998 ctatcaaatcaccccaaatta-tataatcacttaatcaatcaaattgggaagttatttcattgaaactatcaaaacaat 2545921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32098381 - 32098351
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaa 31  Q
    |||||||||||||||||||||||||||||||    
T  32098381 aaattaagtctaatacccaccccccacttaa 32098351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 33452757 - 33452858
Alignment:
Q  104 ttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtga-tttcattgaaagaatcacaacaat 202  Q
    ||||| |||||||| | ||  |||||||||||| | ||||| |||||||||| ||| | |||||||| ||||| | ||| ||  ||||||||||||||||    
T  33452757 ttttggacataaatcttatggtatcaaaccacctccaatttatataatcactcaattaatcaatttgaaaagttattttaataaaaagaatcacaacaat 33452856  T
Q  203 ca 204  Q
    ||    
T  33452857 ca 33452858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3471454 - 3471486
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||||| |||||||||||||||||||||||    
T  3471454 aaattaagtgtaatacccaccccccacttaaat 3471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29372229 - 29372261
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||||||||||||||||| |||||||||||    
T  29372229 aaattaagtctaatacccaccacccacttaaat 29372261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42951978 - 42951946
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  42951978 aaattaaatctaatacccaccccccacttaaat 42951946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 26151857 - 26151711
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  26151857 tctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaaga 26151758  T
Q  192 atcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||       |||||||||||||||||||||||||||    
T  26151757 atcacaacaatcatttttttcttcgcataaaccattcgttttaccct 26151711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 19367580 - 19367383
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  ||| |||||||||||||||||    
T  19367580 tatgttatatccttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggattctatcaaaccaccccta 19367481  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||       ||||| |||||||||||||||||||||    
T  19367480 atttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgaataaaccattcgttttaccct 19367383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 42411672 - 42411522
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| |    
T  42411672 agactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaattagtcaatttggaaagctatttcattta 42411573  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  42411572 aagaatcacaacaatcattttttacttcgcataaaccattcgttttaccct 42411522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 18676472 - 18676274
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  ||||||||||||| |||||||    
T  18676472 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaactaccccta 18676373  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||        ||| |||||||||||||||||||||||    
T  18676372 atttgtataataacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttctttgcataaaccattcgttttaccct 18676274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 25222226 - 25222423
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||| ||||||| ||||||||||||||||  |||||||||||| ||  ||||    
T  25222226 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactttagttctcctttttgtacataaatcggatcctatcaaatcattccta 25222325  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  25222326 atttgtataatcacttaattagtcaatttagaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 25222423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 2063755 - 2063871
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2063755 agactctagttttcctttttgtacataaatataatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattga 2063854  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  2063855 aagaatcacaacaatca 2063871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 6530609 - 6530761
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  6530609 agactctagttctcatttttgtacataaatcggatactatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaggtatttcattga 6530708  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccctat 240  Q
    |||||||||||||||||       ||||||||||||||||||||||| |||||    
T  6530709 aagaatcacaacaatcattattttcttcgcataaaccattcgttttatcctat 6530761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 13020373 - 13020521
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |    
T  13020373 agactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattta 13020472  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    ||||||||||||||| |       |||||||||||||||||||||||||    
T  13020473 aagaatcacaacaataatttttttcttcgcataaaccattcgttttacc 13020521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 45042339 - 45042485
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttg--gaaagt-gatttcat 184  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||    
T  45042339 agactctagttcttcttttcgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggtgaaagtctatttcat 45042438  T
Q  185 tgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgtt 231  Q
    ||||||||||||||||||||       ||||||||||||||||||||    
T  45042439 tgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtt 45042485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 34061970 - 34061820
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||| || |||||||||||||||||||||||  ||||||||||    
T  34061970 agactatagttcttctttttgtacataaatctggtcctatcaaaccacccataatttgtatgattacttaatcagtcaatttggaaagctatttcattga 34061871  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       ||||||||||||||| |||||||||||    
T  34061870 aagaatcacaacaatcatttttttcttcgcataaaccatccgttttaccct 34061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 45618931 - 45619076
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  45618931 tctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgg-aagctatttcattgaaaga 45619029  T
Q  192 atcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||       |||||||||||||||| ||||||||||    
T  45619030 atcacaacaatcatttttttcttcgcataaaccatttgttttaccct 45619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 7993582 - 7993733
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  7993582 agactctagttctcctttttgtacataaaccggatcctatcaaaccacccctaatttgtataatcacttaatcagccaatttggaaagctatttcattga 7993681  T
Q  188 aagaatcacaacaatc-annnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||         |||||||||||||||||||||||||||    
T  7993682 aagaatcacaacaatctttttttttcttcgcataaaccattcgttttaccct 7993733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 41096652 - 41096501
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  41096652 agactctagttctcctttttgtacataaatcagatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttcattga 41096553  T
Q  188 aagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||        |||||||| ||||||||||||||||||    
T  41096552 aagaatcacaacaatcattttttttcttcgcattaaccattcgttttaccct 41096501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 4855948 - 4856089
Alignment:
Q  94 tagttcttctttttgta-cataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaa 192  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  4855948 tagttctcctttttgtaacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagtgaatttggaaagctatttcattgaaagaa 4856047  T
Q  193 tcacaacaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    ||||||||||||       |||||||||||||||||||||||    
T  4856048 tcacaacaatcatttttttcttcgcataaaccattcgtttta 4856089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 42759909 - 42759720
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  |||| ||||||||||||| ||    
T  42759909 tatgttatatcattttctttctttagtacacgtttgagtttttttttagactctagttctcctttttgtacataaatcggatcatatcaaaccacccata 42759810  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||| ||||||||        ||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  42759809 atttttataatca--------gtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 42759720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 12269375 - 12269520
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||| |    
T  12269375 agactctagttctcttttttgcacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagt-gatttggaaagctatttcattaa 12269473  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    || |||||| |||||||       |||| ||||||||||||||||||    
T  12269474 aaaaatcaccacaatcatttttttcttcacataaaccattcgtttta 12269520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 1418860 - 1418973
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||  |||||| | |||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  1418860 agactctagttctactttttagacataatt-tgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgtaaagctatttcattga 1418958  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  1418959 aagaatcacaacaat 1418973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 18173032 - 18172938
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | |||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||| |||||||||||||||||||    
T  18173032 acataaatctggtactatcaaaccacccctaatttgtataatcacttaatcactcaatttgaaaagctatttcatcgaaagaatcacaacaatca 18172938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 36481354 - 36481494
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||          |||||||  ||||||||||    
T  36481354 agactctaattctcctttttgtacataaattggatcctttcaaaccacccctaatttgtataatcacttaa----------tggaaagctatttcattga 36481443  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       ||||||||||||||||| |||||||||    
T  36481444 aagaatcacaacaatcatttttttcttcgcataaaccattcattttaccct 36481494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 39081348 - 39081462
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||| | |||| || |||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  39081348 agactctagttttactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 39081447  T
Q  188 aagaatcacaacaat 202  Q
    |||||| ||||||||    
T  39081448 aagaattacaacaat 39081462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 15457472 - 15457564
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||    
T  15457472 acataaatctggtactatcaaactacccccaatttgtataatcacttaatcagtcaatttgaaaagctattttattgaaagaatcacaacaat 15457564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 36060019 - 36059903
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||  ||| |||| |||| |||||||||||||   |||||||||||||||||||||||| |||||  ||||  ||||||||||    
T  36060019 agactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctatttcattga 36059920  T
Q  188 aagaatcacaacaatca 204  Q
    ||||| |||||||||||    
T  36059919 aagaaccacaacaatca 36059903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 21747344 - 21747230
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||||| | || |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||  ||    || |||||||    
T  21747344 agactttagttcttctatctgaacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttaaaatactatgtcattga 21747245  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  21747244 aagaatcacaacaat 21747230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 38985801 - 38985707
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||| | |||||||||||||| ||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  38985801 acataaatttggtactatcaaaccacctccaatttgtataatcatttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaatca 38985707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 18916168 - 18916052
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||||  | || |||||||| || | ||||||||||| ||| |||||||||||||||||||||| |||||||| ||||  |||||| |||    
T  18916168 agactttagttcttcaatctggacataaatctggtactatcaaaccatccccaatttgtataatcacttaatcaatcaatttgaaaagctatttcactga 18916069  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||| ||||||    
T  18916068 aagaatcacagcaatca 18916052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 29480751 - 29480637
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||  |||| || |||||||| |||| |||| ||||||||   |||||| |||| |||||| |||||||||||| ||| | ||||||||||    
T  29480751 agactttagttcaactttctggacataaatttgatgctattaaaccaccatcaatttgaataaacacttattcagtcaatttgaaaaattatttcattga 29480652  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  29480651 aagaatcacaacaat 29480637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 27302642 - 27302526
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| ||||||| | || ||| ||||  ||| ||| |||| |||||  ||||||||||||||||||||| ||||||||| ||||  || ||||| |    
T  27302642 agactctaattcttctgtctggacaaaaattcgatgctaccaaatcaccctcaatttgtataatcacttaatcggtcaatttgaaaagctatatcattaa 27302543  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  27302542 aagaatcacaacaatca 27302526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 13997264 - 13997378
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||   |||| || |||||||| |||| ||||  |||||||   |||||| ||||||||||||| |||||||||| |||   ||||||||||    
T  13997264 agactctagtttcactttctggacataaatttgatgctattgaaccaccgtcaatttgaataatcacttaatgagtcaatttgaaaaactatttcattga 13997363  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  13997364 aagaatcacaacaat 13997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 18482599 - 18482506
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaattt-ggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| |||| ||| ||||| ||||| ||||||||||||| ||||||||||||||||   | ||| |||||||||||||||| ||||||||    
T  18482599 acataaatttgatgctaacaaactacccccaatttgtataatcgcttaatcagtcaatttaacacagttatttcattgaaagaataacaacaat 18482506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 1226364 - 1226264
Alignment:
Q  105 tttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa-gaatcacaacaatc 203  Q
    |||| |||||||| |||| ||| ||||||||||  ||||| |||||||||| |||||| ||||||| ||||| |||||| | ||| ||||||||||||||    
T  1226364 tttggacataaatctgatgctaccaaaccaccctcaatttatataatcactcaatcagacaatttgaaaagttatttcaataaaaagaatcacaacaatc 1226265  T
Q  204 a 204  Q
    |    
T  1226264 a 1226264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 31273242 - 31273168
Alignment:
Q  125 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaaca 200  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||    |||||||| ||||||||| ||||    
T  31273242 tatcaaaccacccc-aatttgtataatcatttaatcagtcaatttggaatactatttcattaaaagaatcataaca 31273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 38599404 - 38599466
Alignment:
Q  140 aatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||||||||||||||||| |||||||| |||   |||||||||||||||||| ||||||    
T  38599404 aatttgtataatcacttaatcaatcaatttgaaaaactatttcattgaaagaatcaaaacaat 38599466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 13001597 - 13001658
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataat 151  Q
    |||||| |||| |||||| ||||||||| |||| ||||||||||||||| ||||||||||||    
T  13001597 actctaattctcctttttatacataaatttgatgctatcaaaccacccccaatttgtataat 13001658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 17117729 - 17117643
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||||| ||||||||||||||        ||||||||| ||||  |||||||||||||||||||||||||||    
T  17117729 acataaatctggtactatcaaaccacccccaatttgtataatca--------gtcaatttgaaaagctatttcattgaaagaatcacaacaatca 17117643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 32186264 - 32186216
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacc 136  Q
    ||||||||||||| ||||||  |||||||| |||| |||||||||||||    
T  32186264 agactctagttctactttttagacataaatttgatgctatcaaaccacc 32186216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36481266 - 36481298
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  36481266 aaattaaatctaatacccaccccccacttaaat 36481298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 50552354 - 50552593
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnntat----gttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctag 96  Q
    ||||||| |||||||||||||||||||||||||       |||    ||||||| |||||||||||| | ||||||||||||         |||||||||    
T  50552354 aaattaaatctaatacccaccccccacttaaataaaaaaatatatatgttatatcattttctttctttagtacacgtttgagtttttttgtagactctag 50552453  T
Q  97 ttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcac 196  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  50552454 ttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcggtcaatttgaaaagttatttcattgaaagaatcac 50552553  T
Q  197 aacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    ||||||||       ||||| ||||||||||| |||||||    
T  50552554 aacaatcatttttttcttcgtataaaccattcattttacc 50552593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 10109670 - 10109820
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  10109670 agactctagttctcctttttgtacataaattggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagcaatttcattga 10109769  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||| ||||||||||||||    
T  10109770 aagaatcacaacaatcatttttttcttcgcataaactattcgttttaccct 10109820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 12884298 - 12884102
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||| | ||||||||||||||||  |||||||||||||||||||||    
T  12884298 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactctagttttcctttttgtacataaatcggatcctatcaaaccaccccta 12884199  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  12884198 atttgtataatcacttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatca-ttttttcttcgcataaaccattcgttttaccct 12884102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 48722484 - 48722334
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| ||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48722484 agactctatttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattga 48722385  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    || ||||||||||||||       |||||||||||||||||||||||||||    
T  48722384 aataatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 48722334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 30899606 - 30899758
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  30899606 agactctagttctcctttttgtacataaatcggatcctatcaaatcacccctaatttgtataatcacttaattagtcaatttggaaagctatttcattga 30899705  T
Q  188 aagaatcacaacaatca--nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||         |||||||||||||||||||||||||||    
T  30899706 aagaatcacaacaatcatttttttttcttcgcataaaccattcgttttaccct 30899758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 6150671 - 6150819
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||  ||||||||||    
T  6150671 agactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttatataatcatttaatcagtcaatttgaaaagctatttcattga 6150770  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||       |||| ||||||||||||||||||||    
T  6150771 aagaatcacaacaatcaattttttcttcacataaaccattcgttttacc 6150819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 17487397 - 17487251
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||    
T  17487397 agactctagttctcctttttttacataaatcggatcctatcaaaccacccctaatttatataatcacttaataaatcaatttggaaagttatttcattga 17487298  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    |||||||||||||||||       ||| |||||||||||||||||||    
T  17487297 aagaatcacaacaatcatttttttctttgcataaaccattcgtttta 17487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 51110262 - 51110069
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||| ||||| | ||||||||||||||||  |||||||||||||||||||||    
T  51110262 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactatagttatcctttttgtacataaatcggatcctatcaaaccaccccta 51110163  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    |||| |||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |       |||||||||||||||| ||||||    
T  51110162 atttctataatcacttaatcagtcaatttagaaagctatttcattgaaagaatcacaacaataagttttttcttcgcataaaccatttgtttta 51110069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 52055410 - 52055652
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnn----tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnn-agactcta 95  Q
    |||||||||||||||||||| ||||||||||||           |||||||||| |||||||||||||| || |||||||||          ||||||||    
T  52055410 aaattaagtctaatacccactccccacttaaatgaataaaaatatatgttatatcattttctttcttcagtatacgtttgagttttttttttagactcta 52055509  T
Q  96 gttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatca 195  Q
    ||||| |||||||||||||||| | ||| |||||||| | || |||||| |||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  52055510 gttctcctttttgtacataaatctaatcatatcaaactatccataatttatataatcacttaatcaatcaatttggaaagctatttcattgaaagaatca 52055609  T
Q  196 caacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||       |||||||||||||||||||||||||||    
T  52055610 caacaatcagtttttccttcgcataaaccattcgttttaccct 52055652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 14084815 - 14084664
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||||||||||||| |||||  ||||||||||    
T  14084815 agactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaaaatgtataatcacttaatcagtcaatttagaaagctatttcattga 14084716  T
Q  188 aagaatcacaacaatc-annnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||| |||| |       |||||||||||||||||||||||||||    
T  14084715 aagaatcacaataatcaatttttttcttcgcataaaccattcgttttaccct 14084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 20905401 - 20905251
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||    ||||||||||    
T  20905401 agactctagttctcctttttgtacataaatctaatcctatcaaaccagccctaatttgtataatcacttattcagtcaatttggaagtctatttcattga 20905302  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||| |       ||||| |||||||||||||||||||||    
T  20905301 aagaatcacaacaataatttttttcttcgtataaaccattcgttttaccct 20905251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 29208212 - 29208062
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  ||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||| |||||    ||||||||||    
T  29208212 agactctagttctcttttttgtacataaatctaatcatatcaaaccacccctaatttgtataatcatttaatcagtcaatctggaagtctatttcattga 29208113  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  29208112 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 29208062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 1 - 107
Alignment:
Q  132 ccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgtt 231  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  1 ccacccttaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtt 100  T
Q  232 ttaccct 238  Q
    |||||||    
T  101 ttaccct 107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 27703643 - 27703494
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||    
T  27703643 agactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataatcacttaatcagtcaatttggaaagctatttcatcga 27703544  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||        ||||||||||||||||||||| ||||    
T  27703543 aagaatcacaacaatcatttcatt-ttcgcataaaccattcgtttttccct 27703494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 25930554 - 25930670
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  25930554 agactctagttctcatttttgtacataaatctgatcctatcaaactacccctaatttgtataatcacttaatcagtcaacttgaaaagctatttcattga 25930653  T
Q  188 aagaatcacaacaatca 204  Q
    ||| |||||||||||||    
T  25930654 aaggatcacaacaatca 25930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 28885775 - 28885639
Alignment:
Q  98 tcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcaca 197  Q
    |||| ||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||  ||||||||| ||||||||||    
T  28885775 tcttttttttgtgcataaatcggatcctatcaaaccacccataatttgtataatcacttaatcaatcaattttgaaagctatttcattgtaagaatcaca 28885676  T
Q  198 acaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    |||||||       |||||||||||||||||||||||    
T  28885675 acaatcatttttttcttcgcataaaccattcgtttta 28885639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 18128098 - 18127901
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnn-agactctagttcttctttttgtacataaatatgatcctatcaaaccacccct 139  Q
    |||||||||| |||||||||||| | ||||||||||||          ||| ||||||||| ||||| |||| |||||  |||||||||||||||||| |    
T  18128098 tatgttatatcattttctttctttagtacacgtttgagttttttttctagattctagttctcctttt-gtacgtaaatcggatcctatcaaaccacccat 18128000  T
Q  140 aatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| |       |||||||||||| ||||||||||||||    
T  18127999 aatttgtataatcacttaatcagtcaatttgaaaagctatttcattgcaagaatcacaacaattatttttttcttcgcataaactattcgttttaccct 18127901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 33124793 - 33124596
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactcta--gttcttctttttgtacataaatatgatcctatcaaaccacccc 138  Q
    ||||||||||  ||||||||||| | ||||||||||||         ||||||||  ||||| |||||| |||||||||  |||||||| |||||||| |    
T  33124793 tatgttatatccttttctttctttagtacacgtttgagtttttttttagactctatagttctcctttttctacataaatcggatcctattaaaccacctc 33124694  T
Q  139 taatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    ||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||       |||| ||||||||||||||| ||||    
T  33124693 taatttgtataatcacttaataagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcacataaaccattcgttatacc 33124596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 5560433 - 5560549
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||  ||| || |||||||| || | ||| ||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  5560433 agactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatttgtataatcacttaatcagtcaatttaaaaagttatttcattga 5560532  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  5560533 aagaatcacaacaatca 5560549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 12971356 - 12971472
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||| ||    
T  12971356 agactttagttctcctatctggacataaatctgatattatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatcga 12971455  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  12971456 aagaatcacaacaatca 12971472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 6333629 - 6333514
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  ||  ||||||||||| |||| ||||||||||| || |||| |||| |||||||||||||||||| ||||||||| |||| ||| |    
T  6333629 agactctagttctcattcctgtacataaatctgatactatcaaaccatcc-taatctgtaaaatcacttaatcagtcaaattggaaagttattttattaa 6333531  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  6333530 aagaatcacaacaatca 6333514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 50371084 - 50371200
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || | |||||  |||| |||||||| |||||  ||||||||||||||||||||||||||||||| |||    |||||||||    
T  50371084 agactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatttgtataatcacttaatcagtcaatttgaaaaactgtttcattga 50371183  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  50371184 aagaatcacaacaatca 50371200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 30005015 - 30004874
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||| ||||||||||||||||  |||||||||||||||      ||||||||||||||||||||| | |||||| ||||  ||||||||||    
T  30005015 agactctacttctcctttttgtacataaatccgatcctatcaaacca------atttgtataatcacttaatcaattaatttgaaaagctatttcattga 30004922  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    ||||||| |||||||||       |||| ||||||||||||||||||||    
T  30004921 aagaatcgcaacaatca-tttgttcttcccataaaccattcgttttacc 30004874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 44836831 - 44836726
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| |||| || |||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||| |||   |||||| |||||||    
T  44836831 tctagttctactttctgaacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcactgaaaga 44836732  T
Q  192 atcaca 197  Q
    ||||||    
T  44836731 atcaca 44836726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 37873876 - 37873762
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| |  |||||||| |||| |||||||||||||   |||||||||| ||||||||||||| |||||| |||    |||||||||    
T  37873876 agactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatttgtatagtcacttaatcagttaatttgaaaaactgtttcattga 37873777  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  37873776 aagaatcacaacaat 37873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 15441240 - 15441355
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcatt-g 186  Q
    ||||||||||||| |||| |  |||||||||| || |||||||||||||   |||||||||||||||||||||| |||||||  ||||  ||||||||      
T  15441240 agactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataatcacttaatcactcaatttataaagctatttcattaa 15441339  T
Q  187 aaagaatcacaacaat 202  Q
    ||||||||||||||||    
T  15441340 aaagaatcacaacaat 15441355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 28189301 - 28189403
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||||||||||||||||||         ||||| ||||||| |||||||||||||||| |||||||||||||| ||| |||    
T  28189301 tatgttatatcattttctttcttcaatacacgtttgagtttttttt-agactttagttctcctttttgtacataaatctgatcctatcaaactacctcta 28189399  T
Q  141 attt 144  Q
    ||||    
T  28189400 attt 28189403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 17674444 - 17674354
Alignment:
Q  112 ataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||| |||| |||| ||||||||   |||||| |||||||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  17674444 ataaatttgatgctattaaaccaccatcaatttgaataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 17674354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 42740060 - 42740174
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||| | |||| ||||||||| |||   |||||||||||| ||||||| |||||||||| |||   ||||||||||    
T  42740060 agactctagttctactttctggacataagtttgatgctatcaaacaaccatcaatttgtataataacttaattagtcaatttgaaaaactatttcattga 42740159  T
Q  188 aagaatcacaacaat 202  Q
    ||||||| |||||||    
T  42740160 aagaatcgcaacaat 42740174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 3907434 - 3907528
Alignment:
Q  100 ttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatca 195  Q
    |||||| || ||||||||| |||  ||||||||||| || |||||||||||||| ||||||| |||||||| ||| | ||||||||||||||||||    
T  3907434 ttctttatgaacataaatacgatggtatcaaaccactcc-aatttgtataatcatttaatcaatcaatttgaaaaattatttcattgaaagaatca 3907528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 22386951 - 22386837
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||  || | || |||||||| |||| ||||  |||||||   |||||| | |||||||||||||||||||||| |||   ||||||||||    
T  22386951 agactctagttccactgtctggacataaatttgatgctatttaaccaccatcaatttgaacaatcacttaatcagtcaatttgaaaaactatttcattga 22386852  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  22386851 aagaatcacaacaat 22386837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 13120939 - 13120866
Alignment:
Q  129 aaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||||||  ||||||| |||||||||||||||||||||||| |||   ||||||||||||||||||| |||||    
T  13120939 aaaccaccattaatttgaataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcaccacaat 13120866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 24556778 - 24556870
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| || | |||| ||||||||   |||||| ||||||||||||| |||||||||| |||   |||||||| ||||||||||||||||    
T  24556778 acataaatttggtgctattaaaccaccatcaatttgaataatcacttaataagtcaatttgaaaaactatttcatttaaagaatcacaacaat 24556870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 9777387 - 9777445
Alignment:
Q  112 ataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttg 170  Q
    |||||| |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||||    
T  9777387 ataaatctgatgctaccaaaccacccccaatttatataatcactcaatcagtcaatttg 9777445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27703735 - 27703703
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    |||||||||||||||||||||||||||||||||    
T  27703735 aaattaagtctaatacccaccccccacttaaat 27703703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 26486477 - 26486407
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatc 160  Q
    ||||||||||| |||| || | |||||| |||| ||||||||||| |   |||||||||||||||||||||    
T  26486477 actctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtataatcacttaatc 26486407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 38263814 - 38263924
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||  ||||||| |||||||| |||| |||| |||||||     ||||| || || |||||||||||||||||  |||   ||||||||||    
T  38263814 agactctagttccactttttggacataaatttgatgctattaaaccactatcgatttgaattattacttaatcagtcaatttaaaaaactatttcattga 38263913  T
Q  188 aagaatcacaa 198  Q
     ||||||||||    
T  38263914 tagaatcacaa 38263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12971280 - 12971312
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  12971280 aaattaactctaatacccaccccccacttaaat 12971312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17487489 - 17487457
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  17487489 aaattaaatctaatacccaccccccacttaaat 17487457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28189253 - 28189285
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    |||| ||||||||||||||||||||||||||||    
T  28189253 aaatcaagtctaatacccaccccccacttaaat 28189285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33909927 - 33910164
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaatnnnnnnntatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttct 100  Q
    ||||||||||||||||||||||| |||||||||        || |  ||||  |||||||||||  ||||||||||||         |||||||||||||    
T  33909927 aaattaagtctaatacccacccctcacttaaataaaaaaaaatatgttatatctttctttcttcggtacacgtttgagtttttttctagactctagttct 33910026  T
Q  101 tctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaaca 200  Q
     |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||    
T  33910027 cctttttgtacataaatctgatcctatcaaatcacccctaatttgtataatcgcttaatcagtcaatttgaaaagctatttcattgaaagaatcacaaca 33910126  T
Q  201 atcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||       |||||||||||||||||||||||||||    
T  33910127 atcatttttttcttcgcataaaccattcgttttaccct 33910164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 6380198 - 6380048
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||    
T  6380198 agactctagttcttctttttgtacatgaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtctatttcattga 6380099  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  6380098 aagaatcacaacaatcatatttttcttcgcataaaccattcgttttaccct 6380048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 33419279 - 33419083
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| ||||||||||||||         |||||||||||||| |||||||||||||||  ||||||||||||| |||||||    
T  33419279 tatgttatatccttttctttctttaatacacgtttgagtttttttctagactctagttcttgtttttgtacataaatcggatcctatcaaactaccccta 33419180  T
Q  141 atttgtataatcacttaa-tcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||| |||||       |||||||||||||||||||||||||    
T  33419179 atttgtataatcacttaattaagtcaatttgaaaagttatttcattgaaagaatcacaataatcatttttttcttcgcataaaccattcgttttacc 33419083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 11672487 - 11672683
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatat--gatcctatcaaaccacccc 138  Q
    |||||||||| |||||||||||| | ||||| ||||||         ||||||||||||| ||||||||||||| | ||  |||||||||||||||| ||    
T  11672487 tatgttatatcattttctttctttagtacacatttgagtttttttctagactctagttctcctttttgtacatataaatcggatcctatcaaaccactcc 11672586  T
Q  139 taatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttac 235  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||       ||||||||||| ||||||||||||    
T  11672587 taatttgtataatcacttaatcagtcaatttggaaagttatttcaatgaaagaatcacaacaatcatttttttcttcgcataaatcattcgttttac 11672683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 44894143 - 44893993
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||    
T  44894143 agactatagttcttctttttgtacataaatcggatcctattaaaccacccctaatttgtataatcacttaatcaatcaatttggaaagctattttattga 44894044  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||| ||||||||||||||||||||||    
T  44894043 aagaatcacaacaatcatttttttcttcacataaaccattcgttttaccct 44893993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 46221864 - 46221669
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | || |||||||||         |||||||||||||  |||||||||||||||   |||||||||||| |||||||    
T  46221864 tatgttatatcattttctttctttagtatacgtttgagtttttttctagactctagttctcttttttgtacataaatcgaatcctatcaaactaccccta 46221765  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  46221764 atttgtagaatcacttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttattcgcataaaccattcgttttacc 46221669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 18015696 - 18015582
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||| | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  18015696 agactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaaagctatttcattga 18015597  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  18015596 aagaatcacaacaat 18015582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 36796482 - 36796335
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| ||||||||||||||||  ||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  36796482 tctagttctcctttttgtacataaatcggatcctatcaaactacccttaatttgtataataacttaatcagtcaatttggaaaattatttcattgaaaga 36796383  T
Q  192 atcacaacaatca-nnnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||        |||||||||||||||||||||||||||    
T  36796382 atcacaacaatcattttttttcttcgcataaaccattcgttttaccct 36796335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 8358455 - 8358292
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    |||||||||| |||||||||||| | || |||||||||         ||||| ||||||| ||||||||||||||||  |||||||||||||||||||||    
T  8358455 tatgttatatcattttctttctttagtatacgtttgagtttttctctagactttagttctcctttttgtacataaatcggatcctatcaaaccaccccta 8358356  T
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||| ||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||    
T  8358355 atttatataatcacttaatcagtcaatttaaaaagttatctcattgaaagaatcacaacaatca 8358292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 7636440 - 7636324
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||    
T  7636440 agactctacttctcccttttgtacataactctgatcctatcaaaccacccctaatttgtataattacttaatcagtcaatttgaaaagctatttcattga 7636341  T
Q  188 aagaatcacaacaatca 204  Q
    ||||||| |||||||||    
T  7636340 aagaatcgcaacaatca 7636324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 12251365 - 12251252
Alignment:
Q  125 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaacc 224  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||       |||||||||||||    
T  12251365 tatcaaaccacccctaatttctataatcatttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaacc 12251266  T
Q  225 attcgttttaccct 238  Q
    ||||||||||||||    
T  12251265 attcgttttaccct 12251252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 42161283 - 42161088
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctat--caaaccacccc 138  Q
    |||||||||| |||||||||||| | ||||||||||||         |||||||| ||||  |||||||||||||||  ||||||||  |||||||||||    
T  42161283 tatgttatatcattttctttctttagtacacgtttgagtttttttctagactctaattctcatttttgtacataaattggatcctatatcaaaccacccc 42161184  T
Q  139 taatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||| ||| ||       |||||||||||||||||||||||||    
T  42161183 taatttgtataatcacttgatcagttaatttggaaagctatttcattgaaagaatcacagcaa-ca-atttttcttcgcataaaccattcgttttacc 42161088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 4099919 - 4100063
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||| ||| |||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||    
T  4099919 agacgctaattctcctttttgtacataaatcggatc-tatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagctatttcattga 4100017  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgtttt 233  Q
    |||||| ||||||||||       ||||||| ||||||||||||||    
T  4100018 aagaattacaacaatcatttttttcttcgcaaaaaccattcgtttt 4100063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 32956725 - 32956839
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| ||||||||||||||| ||||| |||||||| |||||||||||||||  ||||| ||||||||||    
T  32956725 agactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttatttcattga 32956824  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  32956825 aagaatcacaacaat 32956839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 26282656 - 26282540
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  26282656 agactttagttctcctatctgcacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 26282557  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  26282556 aagaatcacaacaatca 26282540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 26633313 - 26633429
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| |||| ||||||||   ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  26633313 agactctagttctactttctggacataaatttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 26633412  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  26633413 aagaatcacaacaatca 26633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 40001810 - 40001694
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| |||||||||| | || |||||||| || | ||||||||||||| | ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  40001810 agactttagttcttctatctgaacataaatctggtactatcaaaccacctccaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 40001711  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  40001710 aagaatcacaacaatca 40001694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 36438462 - 36438351
Alignment:
Q  91 ctctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaag 190  Q
    |||||||||| |||| || |||||||| |||| ||||||||||||    ||||||||||||||||||||||||||||||| |||   |||||||||||||    
T  36438462 ctctagttctactttctggacataaatttgatgctatcaaaccactatcaatttgtataatcacttaatcagtcaatttgaaaaaccatttcattgaaag 36438363  T
Q  191 aatcacaacaat 202  Q
    ||||||||||||    
T  36438362 aatcacaacaat 36438351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 773974 - 773882
Alignment:
Q  112 ataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||| |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||  |||| ||||||||||||||||||||||    
T  773974 ataaatctgatgctatcaaatcacccctaatttgtataattactttatcagtcaatttgaaaagctattttattgaaagaatcacaacaatca 773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 18895511 - 18895397
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||| |||||| ||| ||  |||||||| ||||  |||||||||||   ||||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  18895511 agactcgagttctacttattagacataaatttgatgttatcaaaccactattaatttgtataatcaattaatcagtcaatttaaaaagttatttcattga 18895412  T
Q  188 aagaatcacaacaat 202  Q
    |||||||||||||||    
T  18895411 aagaatcacaacaat 18895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 40738103 - 40737994
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    ||||||||||| ||||||  |||||||| |||| |||||||||||||   |||||||||||| |||||||||||||||||  ||||  |||| |||||||    
T  40738103 actctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctattttattgaaa 40738004  T
Q  190 gaatcacaac 199  Q
    ||||||||||    
T  40738003 gaatcacaac 40737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 41908143 - 41908244
Alignment:
Q  103 tttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||| |||||||| |||| || |||||||||| | |||||||| |||||||||||||||||||| | ||||   ||||||||||||||||||||||||    
T  41908143 tttttggacataaatctgatgctttcaaaccacctccaatttgtacaatcacttaatcagtcaattagaaaagctgtttcattgaaagaatcacaacaat 41908242  T
Q  203 ca 204  Q
    ||    
T  41908243 ca 41908244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 1365959 - 1366075
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||  | |||| ||||||| |||||||||||||||||| ||||| ||||||| ||    
T  1365959 agactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagttatttcataga 1366058  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  1366059 aagaatcacaacaatca 1366075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 9479079 - 9479191
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    ||||||||||| |||| || |||||||| |||| |||||||||||||   |||||||||||| |||||||||||||||||  |||   ||||| ||||||    
T  9479079 actctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactatttcgttgaaa 9479178  T
Q  190 gaatcacaacaat 202  Q
    |||||||||||||    
T  9479179 gaatcacaacaat 9479191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 25061853 - 25061957
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||| |  |  |||||||| |||||||| |||||| |||||| ||||  ||||||||||    
T  25061853 agactctagttcttctttttggacataaatctgatgctatcaaactattctcaatttgtacaatcactttatcagttaatttgaaaagctatttcattga 25061952  T
Q  188 aagaa 192  Q
    |||||    
T  25061953 aagaa 25061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 30739082 - 30739189
Alignment:
Q  97 ttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcac 196  Q
    |||| |||| || ||||||||  ||| ||||||||||| |   ||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  30739082 ttctcctttctggacataaatcggatgctatcaaaccatcttcaatttttataatcacttaatcagtcaatttgaaaagttatttcattaaaagaatcac 30739181  T
Q  197 aacaatca 204  Q
    ||| ||||    
T  30739182 aacgatca 30739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 40841360 - 40841210
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacc-cctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattg 186  Q
    |||||||| || ||||||||| |||||||||||||  |||||||||||| ||||||||||||||| ||||||  | |||||||  ||||| |||  |||     
T  40841360 agactctaattattctttttggacataaatatgatgttatcaaaccacctcctaatttgtataattacttaactaatcaatttataaagttattctatta 40841261  T
Q  187 aaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    ||||||| |||||| |||        ||||||||||||||||||||| ||||    
T  40841260 aaagaattacaacactcatttcttt-ttcgcataaaccattcgttttcccct 40841210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 44876248 - 44876153
Alignment:
Q  107 tgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||||| |||| |||||||||| | || ||||| || ||||| ||||||||||||||| |||||  |||||||| ||||||||||||||||||    
T  44876248 tgtacataaat-tgatactatcaaaccgcacc-aatttttaaaatcatttaatcagtcaatttagaaagctatttcattaaaagaatcacaacaatca 44876153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 3799835 - 3799758
Alignment:
Q  127 tcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||||| | || ||||||||||| ||||| || |||||| | |||  |||||||||||||||||||||||||||    
T  3799835 tcaaaccacctccaaattgtataatcatttaataagccaattttggaagctatttcattgaaagaatcacaacaatca 3799758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 42312012 - 42312071
Alignment:
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaaca 200  Q
    |||||||||||||||| || |||||||||| ||||  |||||||| ||||||||||||||    
T  42312012 atttgtataatcacttgattagtcaatttgaaaagctatttcattaaaagaatcacaaca 42312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 25610091 - 25610132
Alignment:
Q  163 tcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  25610091 tcaatttgaaaagtcatttcattgaaagaatcacaacaatca 25610132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 7366639 - 7366751
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    ||||||||||  |||| || |||||||| ||||  ||| ||||||||   |||||| ||||| |||||||  ||||||||| |||   |||| |||||||    
T  7366639 actctagttccactttctggacataaatttgatgatattaaaccaccatcaatttgaataattacttaatttgtcaatttgaaaaactattttattgaaa 7366738  T
Q  190 gaatcacaacaat 202  Q
    |||||||||||||    
T  7366739 gaatcacaacaat 7366751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 41852387 - 41852302
Alignment:
Q  113 taaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaaca 200  Q
    |||||||| | |||| ||||||| || ||||| |||||||||||| |||||||||||  | ||| ||||||||||||||||| |||||    
T  41852387 taaatatggtgctataaaaccactcc-aattt-tataatcacttactcagtcaatttaaagagttatttcattgaaagaatcgcaaca 41852302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 16660 - 16810
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  16660 agactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 16759  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||| ||||       |||||||||||||||||||||||||||    
T  16760 aagaatcacaacgatcatatttttcttcgcataaaccattcgttttaccct 16810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16565 - 16597
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    ||||||| |||||||||||||||||||||||||    
T  16565 aaattaaatctaatacccaccccccacttaaat 16597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 13474582 - 13474730
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  13474582 actctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttgtttcattgaaa 13474681  T
Q  190 gaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||       |||||||||||||||||||||||||||    
T  13474682 gaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 13474730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 19099428 - 19099282
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||  ||||||||||    
T  19099428 agactatagttctcctttttgtacataaatctgatcctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaagctatttcattga 19099329  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgtttta 234  Q
    |||||||||||||||||       |||||||||||||||||||||||    
T  19099328 aagaatcacaacaatcatttttttcttcgcataaaccattcgtttta 19099282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 13423814 - 13423964
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||  ||||||||||    
T  13423814 agactctagttctcttttttgtacataaatcggatcctatcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctatttcattga 13423913  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  13423914 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 13423964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 13656111 - 13656310
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcct---atcaaaccaccc 137  Q
    |||||||||| |||||||||||| | ||||||||||||         ||||||||||||| ||||||||||||||||  ||||||   |  |||||| ||    
T  13656111 tatgttatatcattttctttctttagtacacgtttgagttttttct-agactctagttctcctttttgtacataaatcggatcctaaaaaaaaaccatcc 13656209  T
Q  138 ctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccc 237  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  13656210 ctaatttgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccc 13656309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 26377888 - 26377739
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||  ||||||||||    
T  26377888 agactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttattcagtcaatgtgagaagctatttcattga 26377789  T
Q  188 aagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||        |||||||||||||||||||||||||    
T  26377788 aagaatcacaacaatcatttttttccttcgcataaaccattcgttttacc 26377739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 36718681 - 36718532
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||    
T  36718681 agactctagttctcctttttgtacatgaatcggatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttgtaaagttattttattga 36718582  T
Q  188 aagaatcacaacaatca-nnnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||| || |        |||||||||||||||||||||||||    
T  36718581 aagaatcacaaccataattttttttcttcgcataaaccattcgttttacc 36718532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 12661274 - 12661409
Alignment:
Q  103 tttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| ||||||  ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  12661274 tttttgtatataaatcggattctatcaaaccacctctaatttgtataatcacttaaccagtcaatttggaaagctatttcattgaaagaatcacaacaat 12661373  T
Q  203 cannnnnnncttcgcataaaccattcgttttaccct 238  Q
             |||||||||||||||||||||||||||    
T  12661374 attttttttcttcgcataaaccattcgttttaccct 12661409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 10591387 - 10591271
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || ||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  10591387 agactttagttctcctatctgaacataaatatggtactatcaaaccacccccaatttgtataatcacttaatcagttaatttgaaaagttatttcattga 10591288  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  10591287 aagaatcacaacaatca 10591271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 29156162 - 29156256
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  29156162 acataaatctggtactatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatca 29156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 138094 - 138208
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| ||||| | |||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  138094 agactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 138193  T
Q  188 aagaatcacaacaat 202  Q
    || ||||||||||||    
T  138194 aataatcacaacaat 138208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 27351299 - 27351404
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| || | ||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  27351299 agactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgtataaccacttaatcagtcaatttggaaagttatttcattga 27351398  T
Q  188 aagaat 193  Q
    ||||||    
T  27351399 aagaat 27351404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 43511568 - 43511684
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||| ||    
T  43511568 agactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatgga 43511667  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  43511668 aagaatcacaacaatca 43511684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 17514010 - 17513934
Alignment:
Q  128 caaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  17514010 caaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagttatttcactgaaagaatcacaacaatca 17513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 20975957 - 20976051
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||||| | |||||||||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  20975957 acataaatttggtactatcaaaccaccaccaatttgtataatcatttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 20976051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 26311960 - 26312029
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatca 161  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  26311960 tctagttcttctttttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatca 26312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 42291973 - 42291879
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | |||||||| |||| | ||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  42291973 acataaatttggtactatcaaatcaccaccaatttgtataatcacttaatcagtcaatttgaaaatctatttcattgaaagaatcacaacaatca 42291879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 23069172 - 23069277
Alignment:
Q  90 actctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaa 189  Q
    |||||| |||| |||| || ||||||||||||| ||| ||||||||||| ||||||||||||| |||||||| || ||||||||||  ||||||||  ||    
T  23069172 actctaattctcctttctgaacataaatatgatgctagcaaaccacccccaatttgtataatcccttaatcattcgatttggaaagctatttcattacaa 23069271  T
Q  190 gaatca 195  Q
    ||||||    
T  23069272 gaatca 23069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 4734696 - 4734580
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||| ||||||| || | || |||||||| || | ||||||||||||| | ||||||||||||| ||| |||| |||||||| |||   ||||||||||    
T  4734696 agactttagttctcctatctggacataaatctggtactatcaaaccaccaccaatttgtataatcccttgatcactcaatttgaaaatctatttcattga 4734597  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  4734596 aagaatcacaacaatca 4734580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 5829357 - 5829449
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    |||||||| || | ||||||||||| ||  ||||||||||||||||||||||||||||||  ||||  |||||||| ||||||||||||||||||    
T  5829357 acataaatctggtactatcaaaccaacctcaatttgtataatcacttaatcagtcaattt--aaagctatttcattaaaagaatcacaacaatca 5829449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 8398884 - 8398989
Alignment:
Q  41 tatgttatataattttctttcttcaatacacgtttgagnnnnnnnnnagactctagttcttctttttgtacataaatatgatcctatcaaaccaccccta 140  Q
    ||||||||||  ||||||||||| | ||||||||||||         |||||||||||||  |||||||||||||||  |||||||||||||||||||||    
T  8398884 tatgttatatccttttctttctttagtacacgtttgagtttttttttagactctagttctcatttttgtacataaatcggatcctatcaaaccaccccta 8398983  T
Q  141 atttgt 146  Q
    ||||||    
T  8398984 atttgt 8398989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 40956263 - 40956379
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||| || |||||||| |||| | |||||||   | | |||||||||||||||||||||| | |||||| |||   |||||||| |    
T  40956263 agactctagttctcctttgtggacataaatctgatgcaatcaaacattctccaatttgtataatcacttaatcatttaatttgaaaaactatttcattaa 40956362  T
Q  188 aagaatcacaacaatca 204  Q
    |||||||||||||||||    
T  40956363 aagaatcacaacaatca 40956379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 8379613 - 8379538
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcatt 185  Q
    |||||||||||||  ||||||| ||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||    
T  8379613 acataaatatgatgttatcaaatcacccctaatttgtataattacttaatcaattaatttcgaaagttatttcatt 8379538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 10033496 - 10033607
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaat-cagtcaatttggaaagtgatttcattg 186  Q
    ||||||||||||| |||| ||||||||||| |||| |||||||||| ||   |||||||||||||||| | |  |||||||||| ||||  |||| ||||    
T  10033496 agactctagttctactttctgtacataaatttgatgctatcaaacccccatcaatttgtataatcactgattaaagtcaatttgaaaagctattttattg 10033595  T
Q  187 aaagaatcacaa 198  Q
    ||||||||||||    
T  10033596 aaagaatcacaa 10033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 18873458 - 18873521
Alignment:
Q  139 taatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||||||| ||||||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  18873458 taatttgtataaccacttaatcagccaatttgaaaagctatttcattgaaagaatcacaacaat 18873521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 7390460 - 7390400
Alignment:
Q  142 tttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||| |||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaat 7390400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 17325794 - 17325909
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttg-gaaagtgatttcattg 186  Q
    ||||||||||||  |||| || |||||||| |||| |||| |||| |||    ||||| ||||||||||||||||||||||||  |||   |||||||||    
T  17325794 agactctagttccactttctggacataaatttgatgctattaaactaccatcgatttgaataatcacttaatcagtcaatttgaaaaaactatttcattg 17325893  T
Q  187 aaagaatcacaacaat 202  Q
    ||||||||||||||||    
T  17325894 aaagaatcacaacaat 17325909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 33281677 - 33281740
Alignment:
Q  141 atttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||||||||||||| |||||||||  ||||| ||||||||||||||||| ||| |||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttatttcattgaaagaatcccaataatca 33281740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 3349805 - 3349727
Alignment:
Q  126 atcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 204  Q
    ||||||||||  | |||| | ||||| |||||||||||||||||| ||||  ||||||| |||||||||||||||||||    
T  3349805 atcaaaccactaccaattggaataatgacttaatcagtcaatttgaaaagctatttcatagaaagaatcacaacaatca 3349727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 16515496 - 16515588
Alignment:
Q  110 acataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaat 202  Q
    |||||||| |||| |||| ||| ||||   |||||  ||||||||||||||| |||||||| ||| | |||| ||||||||||||||||||||    
T  16515496 acataaatttgatgctattaaaacaccatcaattttaataatcacttaatcaatcaatttgaaaaattattttattgaaagaatcacaacaat 16515588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 931354 - 931417
Alignment:
Q  112 ataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaag 175  Q
    |||||| |||| |||| ||| ||| || |||||||||||||||||||||||||||||| |||||    
T  931354 ataaatttgatgctattaaatcacacccaatttgtataatcacttaatcagtcaatttagaaag 931417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 40779146 - 40779257
Alignment:
Q  92 tctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaaga 191  Q
    ||||||||| |||| || |||||||| ||||  |||||||| | ||| |||||||||||||  ||||| |||||||||| |||   ||| ||||| | ||    
T  40779146 tctagttctcctttctgaacataaatttgatgttatcaaactatccccaatttgtataatcgtttaataagtcaatttgaaaaactattccattg-agga 40779244  T
Q  192 atcacaacaatca 204  Q
    |||||||||||||    
T  40779245 atcacaacaatca 40779257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 26312027 - 26312083
Alignment:
Q  181 tcattgaaagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccc 237  Q
    ||||||||||||||||||||||||       ||||| ||||||||||||||||||||    
T  26312027 tcattgaaagaatcacaacaatcatttttttcttcgtataaaccattcgttttaccc 26312083  T

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Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19099519 - 19099487
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    |||||||||||||||||||||||||| ||||||    
T  19099519 aaattaagtctaatacccaccccccatttaaat 19099487  T

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Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40956168 - 40956200
Alignment:
Q  1 aaattaagtctaatacccaccccccacttaaat 33  Q
    |||||||||||||||||||| ||||||||||||    
T  40956168 aaattaagtctaatacccacaccccacttaaat 40956200  T

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Target: scaffold0181 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 17246 - 17098
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  |||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  17246 agactctagttctcatttttgtatataaatcggatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcgttga 17147  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttacc 236  Q
    |||||||||||||||||       |||||||||||||||||||||||||    
T  17146 aagaatcacaacaatcattttcttcttcgcataaaccattcgttttacc 17098  T

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Target: scaffold0100 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 46287 - 46141
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    |||||||||||||  ||||| |||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    ||||||||||    
T  46287 agactctagttctcatttttatacatatatctgatcctatcaaaccacccataatttggataatcacttaatcagtcaatttggaagtctatttcattga 46188  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttac 235  Q
    || ||||||||||||||       |||| |||||||||||||||||||    
T  46187 aataatcacaacaatca-ttttttcttcacataaaccattcgttttac 46141  T

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Target: scaffold0564 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 1023 - 1161
Alignment:
Q  88 agactctagttcttctttttgtacataaatatgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattga 187  Q
    ||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||||||            |||||||||||||  ||||||||||    
T  1023 agactctagttctcctttttgtgcataaatcggatcctatcaaaccacccctaatttgtataa------------tcaatttggaaagctatttcattga 1110  T
Q  188 aagaatcacaacaatcannnnnnncttcgcataaaccattcgttttaccct 238  Q
    |||||||||||||||||       |||||||||||||||||||||||||||    
T  1111 aagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccct 1161  T

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Target: scaffold0606 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 8473 - 8399
Alignment:
Q  124 ctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaa 198  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||    
T  8473 ctatcaaaccacccataatttgtataatcaattaatcagtcaatttcgaaaactatttcattgaaagaatcacaa 8399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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