View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_high_25 (Length: 250)
Name: NF2277_high_25
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41966258 - 41966495
Alignment:
| Q |
1 |
ttttctactaaaaatgagttatgacttgaatcaatgtgaattgaagcaacaataaatttgatgttaaaattgaattgaagaagcaaaaactttaaatttt |
100 |
Q |
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| T |
41966258 |
ttttttactaaaaatgagttatgacttgaatcaatgtgaattgaagaaacaataaatttgatgttaaaattcaattgaagaagcaaaaactttaaatttt |
41966357 |
T |
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| Q |
101 |
gtgttcgagttataatcagttcttgaggtaaattcaattatacgcaaacatatttaaatatatcaaaatcaattctacatcaattttgt-gtctccaaaa |
199 |
Q |
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| T |
41966358 |
gtgtttgagctataatcagttcttgaggtaaattcaattatacgcaaacatatttaaatatatcaaaattaattctacatcaattttgtcgtctctaaaa |
41966457 |
T |
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| Q |
200 |
gtgaaactaaatatacaccaactctattaactttatct |
237 |
Q |
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| T |
41966458 |
gtgaaactaaatatacaccaactctattaactttatct |
41966495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 1227680 - 1227832
Alignment:
| Q |
33 |
aatgtgaattgaagcaacaataaatttgatgttaaaattgaattgaagaagcaaaaactttaaattttgtgttcgagttataatcagttcttgaggtaaa |
132 |
Q |
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|||||||||||||| |||||||||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
1227680 |
aatgtgaattgaagtaacaataaatttgatgctaaaaatcaattgtagaagcaaaaactttaaattttgtcttcgagttataatcggtttttgaggtaaa |
1227779 |
T |
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| Q |
133 |
ttcaattatacgcaaacatatttaaatatatcaaaatcaattctacatcaatt |
185 |
Q |
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| T |
1227780 |
ttcaattatacgcgaacacatttaaatatatcaaaatcaattttacatcaatt |
1227832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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