View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_high_5 (Length: 447)
Name: NF2277_high_5
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 219 - 437
Target Start/End: Original strand, 51110881 - 51111099
Alignment:
| Q |
219 |
gtttcctacatttgttatattgaaggcaaggtttttgaattcctacatgcaagaacagccctgcnnnnnnntccaatagttgatgcaattgttcttaatg |
318 |
Q |
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| T |
51110881 |
gtttcctacatttgttatattgaaggcaaggtttttgaattcctacatgcaagaacagtcctgcaaaaaaatccaatagttgatgcaattgttcttaatg |
51110980 |
T |
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| Q |
319 |
agttctcaaaattagctgaggcacatgcttagatgacagctcttctcaattgaacgatcaccatctgccaccgattcaacgttcaagaaatccagtcaat |
418 |
Q |
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| T |
51110981 |
agttctcaaaattagctgaggcacatgcttagatgacagctcttctcaattgaacgatcaccatctgccaccgattcaacgttcaagaaatccagtcaat |
51111080 |
T |
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| Q |
419 |
tatcactcggtctcctttg |
437 |
Q |
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||||||||||||||||||| |
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| T |
51111081 |
tatcactcggtctcctttg |
51111099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 51110697 - 51110828
Alignment:
| Q |
35 |
ttagtaattattcacattttcatactaaacatagtaaatggcagaacatgtctctaatcttgaatgcatagcaaaagaaaactattcatacgtatgctct |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51110697 |
ttagtaattattcacattttcatactaaacatagtaaatggcagaacatgtctctaatcttgaatgcatagcaaaagaaaactattcatacgcatgctct |
51110796 |
T |
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| Q |
135 |
aattttctttctcatggtttcttcttcttatt |
166 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51110797 |
aattttctttctcatggtttcttcttcttatt |
51110828 |
T |
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