View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_high_8 (Length: 414)
Name: NF2277_high_8
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 17126670 - 17126282
Alignment:
| Q |
11 |
aatgaaaaggccagaagatgttcttccaaaattagttcctccatggtactggactcaaataaaagatattattagactcaaattgaagtttctagaacat |
110 |
Q |
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| T |
17126670 |
aatgaaaaggccagaagatgttcttccaaaattagttcctccatggtactggactcaaataaaagatattattagactcaaattgaagtttctagaacat |
17126571 |
T |
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| Q |
111 |
aaatttgtataacaaatcaaatataaaaggataatgtaaaaataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaat |
210 |
Q |
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| T |
17126570 |
aaatttgtataacaaatcaaatataaaaggataatgtaaaaataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaat |
17126471 |
T |
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| Q |
211 |
gccaagtcttctgctggtctataagggacagcagtaccaaaatcagtgtacctgaaaaacaagaagcacacaactaaatatcggaattaaaatgaaatat |
310 |
Q |
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| T |
17126470 |
gccaagtcttctgctggtctataagggacagcagtaccaaaatcagtgtacctgaaaaacaagaagcacacaactaaatatcggaattaaaatgaaatat |
17126371 |
T |
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| Q |
311 |
ttttcagccgtaaaagttgcatttgtgtgacataacataccagccagtccaattttcagtccacatttttggtttgtagttcttgttgg |
399 |
Q |
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| T |
17126370 |
ttttcagccgtaaaagttgcatttatgtgacataacataccagccagtccaattttctgtccacatttttggtttgtagttcttgttgg |
17126282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 5230946 - 5230835
Alignment:
| Q |
152 |
ataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtctataagggacagcagtaccaaa |
251 |
Q |
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| T |
5230946 |
ataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctatgagatatagcaccaccgaa |
5230847 |
T |
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| Q |
252 |
atcagtgtacct |
263 |
Q |
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|||||||||||| |
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| T |
5230846 |
atcagtgtacct |
5230835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 5231099 - 5231065
Alignment:
| Q |
26 |
agatgttcttccaaaattagttcctccatggtact |
60 |
Q |
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| T |
5231099 |
agatgttctaccaaaattagttcctccatggtact |
5231065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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