View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2277_low_1 (Length: 809)
Name: NF2277_low_1
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 329 - 795
Target Start/End: Complemental strand, 41161095 - 41160628
Alignment:
| Q |
329 |
ttccctatcctttggtatttcctccattttattaggatctcttcaaccccactgcctctcaccttgttccaccaccaatatcctgcatggattccttccc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41161095 |
ttccctatcctttggtatttcctccattttattaggatctcttcaaccccactgcctctcaccttgttccaccaccaatatcctgcatggattccttccc |
41160996 |
T |
|
| Q |
429 |
tttgccaacaacgaccagtttttcctcgaccaaatcaaggcttccgctgcattttaattcgctgctaatcaccggttcttggccatgagaaacgatctcc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41160995 |
tttgccaacaacgaccagtttttcctcgaccaaatcaagtcttccgctgcattttagttcgctgctaatcaccggttcttggccatgagaaacgatctcc |
41160896 |
T |
|
| Q |
529 |
actagagtgaacacccgctggataaaagaaaaactgtgaagatatctcttccactttcccagtttcaattcttggtcacatctgatctctatcgatgcca |
628 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41160895 |
attagagtgaacacccgctggataaaagaaaaactgtgaaaatatctcttccactttcccagtttcaattcttggtcacatctgatctctatcgatgcca |
41160796 |
T |
|
| Q |
629 |
gtggatgttggtaataaaattgtgaacaaatttttgcttttcaagagaa--tttttctactataaaaactaccaagttaaatataagatgcttgagtaat |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41160795 |
gtggatgttggtaataaaattgtgaacaaatttttgcttttcaagaggatttttttctactataaaaactaccaagttaaatataagatgcttgagtaat |
41160696 |
T |
|
| Q |
727 |
gaaatgaactatgtggaactcctgtgagaacaacaaatcagcttgttatcgttgaactcaaacttagag |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41160695 |
gaaatgaactatgtggaactcctgtgagaacaac-aatcagcttgttatcgttgaactcaaacttagag |
41160628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 41161386 - 41161091
Alignment:
| Q |
6 |
catcatcaaaattgacaaaatgtgcagttacagttcacaaagaatccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaat |
105 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41161386 |
catcatcaaaattgacataatgtgcagttacagttcacaaagaatccaatcactactaattgatgtgcgtatctatgatgaagatgatcacgataggaat |
41161287 |
T |
|
| Q |
106 |
cttgatataaaacacaggagatgcaagtaataattcatatatgctctagatcaaactgtatttatccttatactattactagtaattctttacaaaatcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41161286 |
cttgatataaaacacaggagatgcaagtaataattcatatatgctctagatcaaactgtatttatccttatactattactagtaattctttacaaaatcc |
41161187 |
T |
|
| Q |
206 |
acaaaagattcttcattgaggacagcatttgaggaagaacctgtagaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41161186 |
acaaaagattcttcgttgaggacagcatttgaggaagaacctgtagaagctgctaattttgtttgacatggttagtgctgcaagacttttattccc |
41161091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 41163707 - 41163663
Alignment:
| Q |
259 |
taattttgtttgacatggttagtgctgcaagacttttattcccct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41163707 |
taattttgtttgacatggttagtgctgcaggacttttattcccct |
41163663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 572
Target Start/End: Complemental strand, 32656789 - 32656515
Alignment:
| Q |
302 |
ctttccaaacggtggttgagatcttctttccctatcctttggtatttcctccattttattaggatctcttcaaccccactgcctctcaccttgttccacc |
401 |
Q |
| |
|
|||| ||||| ||||| ||||| | ||||||||||| ||||| ||||||||||||| || ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
32656789 |
ctttgcaaactgtggtggagatatcctttccctatcttttgggatttcctccatttccttcaccactcttcacccccactgcctctcacctt---ccacc |
32656693 |
T |
|
| Q |
402 |
accaatatcctgcatggattccttccctttgccaacaacgaccagtttttcctcgaccaaatcaaggcttccgctgcattttaattcgctgctaatcacc |
501 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||| || | ||||||||||| | |||||||||| | | ||||||||||| | ||| |||||||| |
|
|
| T |
32656692 |
tccaacatccaacatggattccttccctatgccaactaccatcagtttttccttgtccaaatcaagtcattcgctgcatttttactcgtcactaatcact |
32656593 |
T |
|
| Q |
502 |
ggttct--------tggccatgagaaacgatctccactagagtgaacacccgctggataaaagaaaaactgtgaagata |
572 |
Q |
| |
|
|||| | ||||||||||||| ||| ||||||||||||| || |||| |||| |||| ||||||||||||||| |
|
|
| T |
32656592 |
ggtttttatctcagtggccatgagaaatgatttccactagagtgacca-ccgccggattaaaggaaaactgtgaagata |
32656515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University