View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_10 (Length: 404)
Name: NF2277_low_10
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 6958295 - 6958665
Alignment:
| Q |
16 |
tcaagtaacattatattgtaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcaatataagtgttattg |
115 |
Q |
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| T |
6958295 |
tcaagtaacattatattgcaatatttgattaacacctttagctctctttcaagcaggtttggtttgtggtttctagattacatcagtataagtgttattg |
6958394 |
T |
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| Q |
116 |
tgatttttggcttatgttttataaggatggtaatatggtaggaatagttgtaggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggt |
215 |
Q |
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| T |
6958395 |
tgatttttggcttatgttttataaggatggtactttggtaggaatagttataggtttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggt |
6958494 |
T |
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| Q |
216 |
cttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6958495 |
cttactcttgaaaaataggcataggtgtaatgtgattccataaacttttgttgattgaatggaaagttgagattcgaaccaatttgacaaagcctgtcaa |
6958594 |
T |
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| Q |
316 |
tgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
386 |
Q |
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| T |
6958595 |
tgatgtggactctgtagttacaattagtggtgatgcaactcttcaggtacttactctactatactctaatc |
6958665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 31081743 - 31081843
Alignment:
| Q |
170 |
tttttagtgtcatttgaagtttgaattctgcttgaaaattgtcggtcttac---tcttgaaaaataggcat-aggtgtaatgtgattccataaacttttg |
265 |
Q |
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| T |
31081743 |
ttttttgtgtcatttgaagttttaattctgatagaaaattgcaggtcttacacttcttgaataataggaataaggtgcaccatgattccataaacttttg |
31081842 |
T |
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| Q |
266 |
t |
266 |
Q |
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| T |
31081843 |
t |
31081843 |
T |
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