View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_15 (Length: 328)
Name: NF2277_low_15
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 767302 - 767017
Alignment:
| Q |
19 |
gtttcgacatttaggtaccactttctttgagaaggtttcgacatttagatattacttaaataattgtctttctagagcacttatgtgttgatacaaaagg |
118 |
Q |
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| T |
767302 |
gtttcgacatttaggtaccactttctttgagaaggtttcgacatttagatattacttaaataattgtctttctagagcacttatgtgctgatacaaaagg |
767203 |
T |
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| Q |
119 |
tctctgtttttactcaaagtgaagcctttctagttagttactctacaaatatcgtataaaggttgcaattcatttgagcttccggtttatgtagaaactt |
218 |
Q |
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| T |
767202 |
tctctgtttttactcaaagtgaagcctttctagttagttactctacaaatatcgtataaaggttgcaattcatttgagcttccggtttatgtagaaactt |
767103 |
T |
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| Q |
219 |
agtcaatgaatttgtatctcaagcataatgcatttgttgagatcaatttatttgtcattgaatccaatgttaatattcccgacttc |
304 |
Q |
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| T |
767102 |
agtcaatgaatttgtatctcaagcataatgcatttgttgagatcaatttatttgtcaatgaatccaatgttaatattcctgacttc |
767017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 21885514 - 21885383
Alignment:
| Q |
110 |
tacaaaaggtctctgtttttactcaaagtgaagcctttctagttagttactctacaaatatcgtataaaggttgcaattcatttgagcttccggtttatg |
209 |
Q |
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||||||||| |||||||||||||||| | ||| ||||| |||| |||||||||||| ||| |||| |||||| ||||| |||| || ||||| | |
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| T |
21885514 |
tacaaaaggcttctgtttttactcaaaatttagcttttcttgtta---actctacaaatactgtagcaaggctgcaat-catttaagctaccagtttacg |
21885419 |
T |
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| Q |
210 |
tagaaactt--agtcaatgaatttgtatctcaagcat |
244 |
Q |
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| T |
21885418 |
tagaaactttcag-caatgaatttgtatctcaagcat |
21885383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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