View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_16 (Length: 324)
Name: NF2277_low_16
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 7790692 - 7791005
Alignment:
| Q |
1 |
ggcgaatttgcttttgaaaaggtttgtggagaggaaggcttcagctgtgtcactgcaggttggggaggatgtgcagttggcttatacacaccatgaggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7790692 |
ggcgaatttgcttttgaaaaggtttgtggagaggaaggcttcagctgtgtcactgcaggttggggaggatgtgcagttggcttatacacaccatgaagag |
7790791 |
T |
|
| Q |
101 |
tcaccgtggcaaccaaggtaaattttaaacactacacgatcacataaacaacttctttgatat-tctaatctaaatttttaatcaaatatatt-aacttt |
198 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
7790792 |
tcaccatggcaaccaaggtaaattttaaacactacatgatcacatgaacaacttctttgatatatctaatctaaatttttaatcaaatatattaaatttt |
7790891 |
T |
|
| Q |
199 |
tgttgatcaaatatgatagagtagaagcaaaaaagaaatttcctcatgatagaaaaagtttatgataagctagccttgaactttgttggtgtcttagtgt |
298 |
Q |
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| T |
7790892 |
tattgatcaaatatgatagagtagaagcaaaaaagaaatttcctcatgatagaaaaagtttatgattagctagctttgaactttgttggtgtcttagtgt |
7790991 |
T |
|
| Q |
299 |
ctctgattgatgat |
312 |
Q |
| |
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||| |||| ||||| |
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| T |
7790992 |
ctcggattcatgat |
7791005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 20219555 - 20219518
Alignment:
| Q |
171 |
taaatttttaatcaaatatattaacttttgttgatcaa |
208 |
Q |
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| T |
20219555 |
taaattttgaatcaaatatattaacttttgttgatcaa |
20219518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 14325934 - 14325894
Alignment:
| Q |
170 |
ctaaatttttaatcaaatatattaacttttgttgatcaaat |
210 |
Q |
| |
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| T |
14325934 |
ctaaattttgaatcaaatacattaatttttgttgatcaaat |
14325894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 26835282 - 26835314
Alignment:
| Q |
172 |
aaatttttaatcaaatatattaacttttgttga |
204 |
Q |
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| T |
26835282 |
aaatttttaaccaaatatattaacttttgttga |
26835314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 55762916 - 55762948
Alignment:
| Q |
172 |
aaatttttaatcaaatatattaacttttgttga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
55762916 |
aaatttttaatcaaatatattaacttttgttga |
55762948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 4479627 - 4479664
Alignment:
| Q |
171 |
taaatttttaatcaaatatattaacttttgttgatcaa |
208 |
Q |
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|||||||| ||||||||||||||| ||||||||||||| |
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| T |
4479627 |
taaattttgaatcaaatatattaatttttgttgatcaa |
4479664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 8777833 - 8777791
Alignment:
| Q |
166 |
taatctaaatttttaatcaaatatattaacttttgttgatcaa |
208 |
Q |
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|||| |||||||| || |||||||||||||||||||||||||| |
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| T |
8777833 |
taatataaattttgaaccaaatatattaacttttgttgatcaa |
8777791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 9238255 - 9238292
Alignment:
| Q |
171 |
taaatttttaatcaaatatattaacttttgttgatcaa |
208 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||| |
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| T |
9238255 |
taaattttgaatcaaatatattaatttttgttgatcaa |
9238292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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