View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_2 (Length: 756)
Name: NF2277_low_2
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Original strand, 37810128 - 37810863
Alignment:
| Q |
1 |
aggagcaccaacagctattgtatttcttattttgttnnnnnnnnnnnnctccaataaaagcaattgcataactgttaactcaccaaaagactggataggc |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810128 |
aggagcaccaacagctatggtatttcttattttgttcaaaaaaa----ctccactaaaagcaattgcataactgttaactcaccaaaagactggataggc |
37810223 |
T |
|
| Q |
101 |
atccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtcccaataatgaggaaccccagcatc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
37810224 |
atccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtaccaataatgaagaaccccagcatc |
37810323 |
T |
|
| Q |
201 |
cacaaaaactttacgagcagctgcttcagtgatgcagtaatgaacactgaacctattgaagctcgatttggcaacatttccttgccacaccagaacacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37810324 |
cacaaaaactttacgagcagctgcttcagtgatgcagtcatgaacactgaacctattgaagctcgatttggcaacacttccttgccacaccagaacacat |
37810423 |
T |
|
| Q |
301 |
ttataggcatagcctgaatcttcattatcttctatctcttttgaaacatcacaccatttaatacgtctaagcataagtttcccatacctcttaattgact |
400 |
Q |
| |
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|||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810424 |
ttattggcatcgcctgaatcttcattatcttctttctcttttgaaacatcacgccatttaatacgtctaagcataagtttcccatacctcttaattgact |
37810523 |
T |
|
| Q |
401 |
tgcttccaccttcaacaacgacaacgctaataccatcacgaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaaagcgggc |
500 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810524 |
tgcttccaccttcaaccacgacaacgctaataccatcacaaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaaagcgggc |
37810623 |
T |
|
| Q |
501 |
tttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgggtcatcaaacaatttcctttccttcttctcacgcagctca |
600 |
Q |
| |
|
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| T |
37810624 |
tttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgggtcatcaaacaacttcctttccttcttctcacgcagctca |
37810723 |
T |
|
| Q |
601 |
gcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgcccacgctcagcagctgcattacgtacttccttttcaagccgggtgggatcttgag |
700 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37810724 |
gcaggagtaagcttgtgtgcaatattcctatctatgtgagcctgctcacgctcggcagctgcattacgtacttccttttcaagccgggtgggatcttgag |
37810823 |
T |
|
| Q |
701 |
ttgcttcagtccctagtaccttatgtaaattactcatctt |
740 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37810824 |
ttgcttcagtccctagtaccttatgtaaattactcatctt |
37810863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 49 - 740
Target Start/End: Original strand, 52352032 - 52352732
Alignment:
| Q |
49 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcat |
148 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||| ||||||||||||||||| |
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| T |
52352032 |
ctccactagaagcaattgcataactgttaactcaccaaaagactggataggcatcctaattatgttaaccaaaaacactagaagacaattcaaacagcat |
52352131 |
T |
|
| Q |
149 |
catcatctgtatagttgacagcttggtcccaataatgaggaaccccagcatccacaaaaactttacgagcagctgcttcagtgatgcagtaatgaacact |
248 |
Q |
| |
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| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52352132 |
cgtcctccgtatagttgacagcttggtcccaataatgaggaaccccagcatccacaaacactttacgagcagctgcttcagtgatgcagtcatgaacact |
52352231 |
T |
|
| Q |
249 |
gaacctattgaagctcgatttggcaacatttccttgccacaccagaacacatttat----aggc-----atagcctgaatcttcattatcttctatctct |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || | ||||||| |||| ||||||| ||||| |
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| T |
52352232 |
gaacctattgaagctcgatttggcaacacttccttgccacaccagaacacatttattcgcaggcttttcatcgtctgaatcctcatcatcttctttctct |
52352331 |
T |
|
| Q |
340 |
tttgaaacatcacaccatttaatacgtctaagcataagtttcccatacctcttaattgacttgcttccaccttcaacaacgacaacgctaataccatcac |
439 |
Q |
| |
|
||||||||||| | ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
52352332 |
tttgaaacatcgctccaattgatgcgtctaagcataagtttcccatacctcttaattgacttgcttccaccttcaaccacaacaacgctaataccatcac |
52352431 |
T |
|
| Q |
440 |
gaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaaagcgggctttgtgatgagaaaggtcatttaccctgtaaagtgagac |
539 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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| T |
52352432 |
aaatcacagcacatccagtcaaacgattttcttgagcattaacatcaactctaaagcgggccttgggatgagagaggtcatttaccctgtaaagtgagac |
52352531 |
T |
|
| Q |
540 |
aagtgtgtccaatgtatttgggtcatcaaacaatttcctttccttcttctcacgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtga |
639 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52352532 |
aagtgtgtccaatgaatttgggtcatcaaagagcttcctttctttcttctcacgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtga |
52352631 |
T |
|
| Q |
640 |
gcctgcccacgctcagcagctgcattacgtacttccttttcaagccgggtgggatcttgagttgcttcagtccctagtaccttatgtaaattactcatct |
739 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52352632 |
gcctgctcacgctcagcagcagcattacgtacttccttttcaagccgggtgggatcttgagttgcttcagtccctagtaccttatgtaaattactcatct |
52352731 |
T |
|
| Q |
740 |
t |
740 |
Q |
| |
|
| |
|
|
| T |
52352732 |
t |
52352732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 361 - 740
Target Start/End: Original strand, 17199198 - 17199566
Alignment:
| Q |
361 |
atacgtctaagcataagtttcccatacctcttaattgacttgcttccaccttcaacaacgacaacgctaataccatcacgaatcaccgcacatccagtca |
460 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||| ||| |||||||||||||||| |
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| T |
17199198 |
atacggctaagcataagtttcctat--ctcttaattgacttgcttccaccttcaaccacaacaatgctaatgccatcacaaattaccgcacatccagtca |
17199295 |
T |
|
| Q |
461 |
aacgattttcttgagcattagcataaactctaaagcgggctttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgg |
560 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17199296 |
aacgattttcttgagca---------actctaaagcgggcattgggatgagagaggccatttaccctgtaaagtgagacaagtgtgtccaatgtatttgg |
17199386 |
T |
|
| Q |
561 |
gtcatcaaacaatttcctttccttcttctcacgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgcccacgctcagcagct |
660 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
17199387 |
ctcatcaaacagtttccttttcttcttctcgcgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgctcacgctcagcagtt |
17199486 |
T |
|
| Q |
661 |
gcattacgtacttccttttcaagccgggtgggatcttgagttgcttcagtccctagtaccttatgtaaattactcatctt |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
17199487 |
gcattacgtacttccttttcaagccgggtgggatcttgagtcgcttctgtccctagtaccttatgtaaattactcatctt |
17199566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 17198600 - 17198673
Alignment:
| Q |
49 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaa |
122 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17198600 |
ctccactagaagcaattgcatatctgttaactcaccaaaagactggataggcatcctaataatgttgaccaaaa |
17198673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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