View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2277_low_3 (Length: 493)

Name: NF2277_low_3
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2277_low_3
NF2277_low_3
[»] chr8 (7 HSPs)
chr8 (20-478)||(15305136-15305602)
chr8 (20-478)||(15485505-15485971)
chr8 (64-249)||(21247413-21247602)
chr8 (64-249)||(27679857-27680046)
chr8 (61-249)||(37209447-37209640)
chr8 (400-484)||(30714923-30715003)
chr8 (401-443)||(30722702-30722744)
[»] chr6 (2 HSPs)
chr6 (64-249)||(23427219-23427408)
chr6 (138-249)||(19816879-19816990)
[»] chr4 (10 HSPs)
chr4 (64-249)||(12435579-12435768)
chr4 (64-249)||(42410844-42411033)
chr4 (64-249)||(911079-911268)
chr4 (91-249)||(29333377-29333537)
chr4 (65-249)||(12429115-12429304)
chr4 (400-484)||(12659893-12659973)
chr4 (408-481)||(13999342-13999411)
chr4 (281-325)||(26057907-26057951)
chr4 (448-484)||(26081893-26081929)
chr4 (400-484)||(30674406-30674487)
[»] chr1 (2 HSPs)
chr1 (64-249)||(38990837-38991026)
chr1 (64-249)||(28519011-28519200)
[»] chr7 (4 HSPs)
chr7 (61-249)||(29185262-29185454)
chr7 (400-484)||(341000-341080)
chr7 (61-249)||(25830617-25830809)
chr7 (268-327)||(5997959-5998018)
[»] chr3 (6 HSPs)
chr3 (61-249)||(2978465-2978657)
chr3 (400-484)||(21882796-21882876)
chr3 (400-484)||(49487431-49487511)
chr3 (425-478)||(26830346-26830399)
chr3 (157-249)||(21477245-21477337)
chr3 (192-224)||(47396601-47396633)
[»] chr5 (6 HSPs)
chr5 (64-249)||(25365627-25365816)
chr5 (64-249)||(25365900-25366089)
chr5 (400-484)||(16672881-16672961)
chr5 (400-484)||(21171893-21171973)
chr5 (400-484)||(23054084-23054164)
chr5 (400-484)||(35265247-35265327)
[»] chr2 (4 HSPs)
chr2 (401-484)||(5836784-5836863)
chr2 (400-484)||(19438243-19438323)
chr2 (400-484)||(25445765-25445845)
chr2 (400-484)||(43288096-43288176)
[»] scaffold0014 (1 HSPs)
scaffold0014 (400-484)||(111247-111327)


Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 15305136 - 15305602
Alignment:
Q  20 atatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 119  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15305136 atatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 15305235  T
Q  120 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  15305236 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctaagatgac 15305335  T
Q  220 gaagactaatccttaatacaagtttctcaagagtgatagaaaggtttggtctatatcctttattatactcttctccaaaata--atagtgtttgatatat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15305336 gaagactaatccttaatacaagtttctcaagagtgatagaaaggtttggtctatatcctttattatactcttctccaaaataatatagtgtttgatatat 15305435  T
Q  318 tatcttcacaaggaatgct------actcctttttcaacactttctctaacacactctctcctattgatattaatgtttgtctcatcacattagcaaaat 411  Q
    ||| |||||||||||||||      ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15305436 tattttcacaaggaatgctatggacactcctttttcaacactttctctaacacactctctcccattgatattaatgtttgtctcatcacattagcaaaat 15305535  T
Q  412 acattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcat 478  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  15305536 acattactgttcgcatttgaactaagatttgaatagtacttcagaatcaatttaagttgttcatcat 15305602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Original strand, 15485505 - 15485971
Alignment:
Q  20 atatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 119  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15485505 atatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 15485604  T
Q  120 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgac 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  15485605 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctaagatgac 15485704  T
Q  220 gaagactaatccttaatacaagtttctcaagagtgatagaaaggtttggtctatatcctttattatactcttctccaaaata--atagtgtttgatatat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15485705 gaagactaatccttaatacaagtttctcaagagtgatagaaaggtttggtctatatcctttattatactcttctccaaaataatatagtgtttgatatat 15485804  T
Q  318 tatcttcacaaggaatgct------actcctttttcaacactttctctaacacactctctcctattgatattaatgtttgtctcatcacattagcaaaat 411  Q
    ||| |||||||||||||||      ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15485805 tattttcacaaggaatgctatggacactcctttttcaacactttctctaacacactctctcccattgatattaatgtttgtctcatcacattagcaaaat 15485904  T
Q  412 acattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcat 478  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  15485905 acattactgttcgcatttgaactaagatttgaatagtacttcagaatcaatttaagttgttcatcat 15485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 21247602 - 21247413
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  21247602 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 21247503  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  21247502 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 21247413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 27679857 - 27680046
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  27679857 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 27679956  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  27679957 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 27680046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 37209640 - 37209447
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtg-ag 155  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||| ||    
T  37209640 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccagaaaaacccaatgggataaaaccttggtgaag 37209541  T
Q  156 tggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
       |||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  37209540 gaaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 37209447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 30714923 - 30715003
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  30714923 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 30715003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 30722702 - 30722744
Alignment:
Q  401 attagcaaaatacattaatgttcacatttgaactaagatatga 443  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  30722702 attaacaaaatacattaatgttctcgtttgaactaagatatga 30722744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 23427408 - 23427219
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  23427408 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 23427309  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  23427308 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 23427219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 19816879 - 19816990
Alignment:
Q  138 ggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaata 237  Q
    ||||||||| || ||||| ||||||||||||||||| |  ||  ||||||||| |||||||||||||||||||| |||||| |||||  |||||||||||    
T  19816879 ggataaaaccatggtgaggggaaaaagagtgcagaagacatttatttctccccctcatgaagacaattatctctaagacgatgaagatcaatccttaata 19816978  T
Q  238 caagtttctcaa 249  Q
    ||||||||||||    
T  19816979 caagtttctcaa 19816990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 12435579 - 12435768
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  12435579 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 12435678  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  12435679 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 12435768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 42411033 - 42410844
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  42411033 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 42410934  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  42410933 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 42410844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 911079 - 911268
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  911079 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 911178  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||| | ||||||| ||| |||| ||||||||||||||    
T  911179 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagagggcgaagaccaattcttagtacaagtttctcaa 911268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 29333537 - 29333377
Alignment:
Q  91 ttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctcc 188  Q
    |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||||||||||||||||||  ||  |||||||    
T  29333537 ttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaagggaaaaagagtgcagaacacatttatttctcc 29333438  T
Q  189 ccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    || |||||||||||| ||||||| ||| | ||||||| ||| |||| ||||||||||||||    
T  29333437 ccctcatgaagacaaatatctcttagatggcgaagaccaattcttagtacaagtttctcaa 29333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 249
Target Start/End: Original strand, 12429115 - 12429304
Alignment:
Q  65 ctagtgaaggaaa-gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtggaaa 161  Q
    ||||||||||||| |||||| | |||||||||||  |||| | |||||  |||||||  ||||| ||||||| || ||||||| |   |||||  |||||    
T  12429115 ctagtgaaggaaaagagtactatatccttttgagtgtgaacttcctcgttaaaaaccttaccaggaaaactcaatgggataaaccctatgtgaagggaaa 12429214  T
Q  162 aagagtgcagaacattttactttctccccatc--atgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||  ||  || | ||||  |  || ||||||| ||||||| ||||||||||||| |||  ||| ||||||||||||||    
T  12429215 aagagtgcagaacacatttattccccccccccccataaagacaaatatctcttagacgacgaagaccaatttttagtacaagtttctcaa 12429304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 12659893 - 12659973
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  12659893 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 12659973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 481
Target Start/End: Complemental strand, 13999411 - 13999342
Alignment:
Q  408 aaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatatt 481  Q
    |||||||||| ||| | || ||||||||||||||||    |||||||| ||||||| || ||||||||||||||    
T  13999411 aaatacattagtgtcctcacttgaactaagatatga----tacttcaggaccaattcaaattgttcatcatatt 13999342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 26057907 - 26057951
Alignment:
Q  281 attatactcttctccaaaataatagtgtttgatatattatcttca 325  Q
    |||||||||||||||||| ||  ||||||||| ||||||||||||    
T  26057907 attatactcttctccaaattagcagtgtttgagatattatcttca 26057951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 26081893 - 26081929
Alignment:
Q  448 tacttcagaaccaatttaagttgttcatcatattctt 484  Q
    |||||||| |||||||||||||||||||||| |||||    
T  26081893 tacttcaggaccaatttaagttgttcatcattttctt 26081929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 30674406 - 30674487
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaattt-aagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||| |||||||||| |||||||| ||||| |||||    
T  30674406 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttctgaaccaatttcaagttgtttatcattttctt 30674487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 38991026 - 38990837
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  38991026 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 38990927  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||| ||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  38990926 aaaagagcgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 38990837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 28519200 - 28519011
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||| |||||  ||||| |  ||||| ||||| | || |||||||||  | ||||   ||    
T  28519200 tctagtgaaggaaaaagagtacaatatccttttgagtttgaatttcctcgttaaaaatcttaccaggaaaacccaatgggataaaaccttggtgaagaga 28519101  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||||||||  ||  ||||||||| |||||||| ||| ||| ||| ||||| ||||||| ||| |||| ||||||||||||||    
T  28519100 aaaagagtgcagaacacatttatttctccccctcatgaaggcaaatatatcttagacggcgaagaccaattcttagtacaagtttctcaa 28519011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 29185454 - 29185262
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 156  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  29185454 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 29185355  T
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||  ||| |||| ||||||||||||||    
T  29185354 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagagcaattcttagtacaagtttctcaa 29185262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 341000 - 341080
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||||||||||| |||||||| ||||| |||||    
T  341000 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcagaaccaattcaagttgtttatcattttctt 341080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 25830617 - 25830809
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 156  Q
    |||||||||||||||||  |||||||| ||||||||||   |||| |||||||  |||||||  |  || ||||| | || |||||||||  | ||||      
T  25830617 aattctagtgaaggaaaaagagtacaatatccttttgaatttgaactgcctcgttaaaaaccttattagaaaaacccaatgggataaaaccttggtgaag 25830716  T
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    | ||||||||||||||| |   |  |||||| || ||||||| |||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  25830717 gaaaaaagagtgcagaatacagttatttctctccctcatgaaaacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 25830809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 5998018 - 5997959
Alignment:
Q  268 gtctatatcctttattatactcttctccaaaataatagtgtttgatatattatcttcaca 327  Q
    |||||| ||| |||||||||||||||| ||| || ||||||| || ||||||||||||||    
T  5998018 gtctatctccgttattatactcttctctaaattattagtgttagagatattatcttcaca 5997959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 2978465 - 2978657
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 156  Q
    |||||||||||||||||  |||||||| ||| |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  2978465 aattctagtgaaggaaaaagagtacaatatctttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 2978564  T
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||| ||||    
T  2978565 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttttcaa 2978657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 21882876 - 21882796
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||||||||||| |||||||| ||||| |||||    
T  21882876 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcagaaccaattcaagttgtttatcattttctt 21882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 49487431 - 49487511
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  49487431 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 49487511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 26830399 - 26830346
Alignment:
Q  425 catttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcat 478  Q
    ||||| ||| |||| |||||| |||||||| |||||| ||||||||||||||||    
T  26830399 catttaaaccaagacatgaatggtacttcaaaaccaagttaagttgttcatcat 26830346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 21477337 - 21477245
Alignment:
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    |||||||||||||||||||  ||  |||| | || |||||||| ||| ||||| | ||||||| ||||| |||  ||| ||||||||||||||    
T  21477337 ggaaaaagagtgcagaacacatttatttcccaccctcatgaaggcaaatatcttttagacgactaagaccaatttttagtacaagtttctcaa 21477245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 47396633 - 47396601
Alignment:
Q  192 tcatgaagacaattatctctgagacgacgaaga 224  Q
    |||||||||||||||| ||||||||||||||||    
T  47396633 tcatgaagacaattatatctgagacgacgaaga 47396601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 25365627 - 25365816
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365627 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365726  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  25365727 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 25365816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 25365900 - 25366089
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365900 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365999  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctctgagacgacgaagactaatccttaatacaagtttctcaa 249  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||    
T  25366000 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctcttagacggcgaagaccaattcttagtacaagtttctcaa 25366089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 16672961 - 16672881
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  16672961 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 16672881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 21171893 - 21171973
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  21171893 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 21171973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 23054084 - 23054164
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  23054084 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 23054164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 35265247 - 35265327
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  35265247 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 35265327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 5836784 - 5836863
Alignment:
Q  401 attagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    |||| |||||||||||||||||| | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  5836784 attaacaaaatacattaatgttctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 5836863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 19438243 - 19438323
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  19438243 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 19438323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 25445765 - 25445845
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  25445765 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 25445845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 43288096 - 43288176
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  43288096 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 43288176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 111327 - 111247
Alignment:
Q  400 cattagcaaaatacattaatgttcacatttgaactaagatatgaatagtacttcagaaccaatttaagttgttcatcatattctt 484  Q
    ||||| ||||||||||| |||| | | ||||||||||||||||    ||||||||| ||||||| |||||||| ||||| |||||    
T  111327 cattaacaaaatacattgatgtcctcgtttgaactaagatatg----gtacttcaggaccaattcaagttgtttatcattttctt 111247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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