View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2277_low_32 (Length: 227)

Name: NF2277_low_32
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2277_low_32
NF2277_low_32
[»] chr8 (5 HSPs)
chr8 (20-211)||(15305136-15305327)
chr8 (20-211)||(15485505-15485696)
chr8 (64-211)||(21247451-21247602)
chr8 (64-211)||(27679857-27680008)
chr8 (61-211)||(37209485-37209640)
[»] chr6 (2 HSPs)
chr6 (64-211)||(23427257-23427408)
chr6 (138-211)||(19816879-19816952)
[»] chr4 (4 HSPs)
chr4 (64-211)||(911079-911230)
chr4 (64-211)||(12435579-12435730)
chr4 (64-211)||(42410882-42411033)
chr4 (91-211)||(29333415-29333537)
[»] chr7 (1 HSPs)
chr7 (61-211)||(29185300-29185454)
[»] chr1 (2 HSPs)
chr1 (64-211)||(38990875-38991026)
chr1 (64-199)||(28519061-28519200)
[»] chr3 (1 HSPs)
chr3 (61-211)||(2978465-2978619)
[»] chr5 (2 HSPs)
chr5 (64-211)||(25365627-25365778)
chr5 (64-211)||(25365900-25366051)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 15305136 - 15305327
Alignment:
Q  20 atatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 119  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15305136 atatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 15305235  T
Q  120 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15305236 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 15305327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 15485505 - 15485696
Alignment:
Q  20 atatacctcatgaaaaccttgctataaaaagctctagaaataattctagtgaaggaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 119  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15485505 atatacctcataaaaaccttactataaaaagctctagaaaaaattctagtgaagaaaagagtacaacatccttttgagcatgaattgcctcgcgaaaaac 15485604  T
Q  120 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15485605 caccagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 15485696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 21247602 - 21247451
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  21247602 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 21247503  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  21247502 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 21247451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 27679857 - 27680008
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  27679857 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 27679956  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  27679957 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 27680008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 37209640 - 37209485
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtg-ag 155  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||| ||    
T  37209640 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccagaaaaacccaatgggataaaaccttggtgaag 37209541  T
Q  156 tggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
       |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  37209540 gaaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 37209485  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 23427408 - 23427257
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  23427408 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 23427309  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  23427308 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 23427257  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 19816879 - 19816952
Alignment:
Q  138 ggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||| || ||||| ||||||||||||||||| |  ||  ||||||||| ||||||||||||||||||||    
T  19816879 ggataaaaccatggtgaggggaaaaagagtgcagaagacatttatttctccccctcatgaagacaattatctct 19816952  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 911079 - 911230
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  911079 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 911178  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  911179 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 911230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 12435579 - 12435730
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  12435579 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 12435678  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  12435679 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 12435730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 42411033 - 42410882
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  42411033 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 42410934  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  42410933 aaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 42410882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 29333537 - 29333415
Alignment:
Q  91 ttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtggaaaaagagtgcagaacattttactttctcc 188  Q
    |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||||||||||||||||||  ||  |||||||    
T  29333537 ttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaagggaaaaagagtgcagaacacatttatttctcc 29333438  T
Q  189 ccatcatgaagacaattatctct 211  Q
    || |||||||||||| |||||||    
T  29333437 ccctcatgaagacaaatatctct 29333415  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 29185454 - 29185300
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 156  Q
    |||||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  29185454 aattctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 29185355  T
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  29185354 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 29185300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 38991026 - 38990875
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||  |||    
T  38991026 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggga 38990927  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||| ||||||||  ||  ||||||||| |||||||||||| |||||||    
T  38990926 aaaagagcgcagaacacatttatttctccccctcatgaagacaaatatctct 38990875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 28519200 - 28519061
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||| |||||  ||||| |  ||||| ||||| | || |||||||||  | ||||   ||    
T  28519200 tctagtgaaggaaaaagagtacaatatccttttgagtttgaatttcctcgttaaaaatcttaccaggaaaacccaatgggataaaaccttggtgaagaga 28519101  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaag 199  Q
    ||||||||||||||||  ||  ||||||||| ||||||||    
T  28519100 aaaagagtgcagaacacatttatttctccccctcatgaag 28519061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 2978465 - 2978619
Alignment:
Q  61 aattctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagt 156  Q
    |||||||||||||||||  |||||||| ||| |||||||  ||||||||||||  |||||||  ||||| ||||| | || |||||||||  | ||||      
T  2978465 aattctagtgaaggaaaaagagtacaatatctttttgagtttgaattgcctcgttaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaag 2978564  T
Q  157 ggaaaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    | |||||||||||||||||  ||  ||||||||| |||||||||||| |||||||    
T  2978565 gaaaaaagagtgcagaacacatttatttctccccctcatgaagacaaatatctct 2978619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 25365627 - 25365778
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365627 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365726  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| |||||||    
T  25365727 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctct 25365778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 25365900 - 25366051
Alignment:
Q  64 tctagtgaaggaaa--gagtacaacatccttttgagcatgaattgcctcgcgaaaaacc--accagcaaaactcgataggataaaacaattgtgagtgga 159  Q
    ||||||||||||||  |||||||| |||||||||||  |||||||||||   |||||||  ||||| ||||| | || |||||||||  | ||||  | |    
T  25365900 tctagtgaaggaaaaagagtacaatatccttttgagtttgaattgcctcattaaaaaccttaccaggaaaacccaatgggataaaaccttggtgaaggaa 25365999  T
Q  160 aaaagagtgcagaacattttactttctccccatcatgaagacaattatctct 211  Q
    ||||||||||| ||||  ||  ||||||||| |||||||||||| |||||||    
T  25366000 aaaagagtgcataacacatttatttctccccctcatgaagacaaatatctct 25366051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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